RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 ANKDD1BA6NHY2 528 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 TRIM49D1C9J1S8 452 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 RIPK2O43353 540 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 SNRPAP09012 282 aaKnown RBP13.48□□□□□ -0.25
VAMP4-203ENST00000474047 SLBPQ14493 270 aaKnown RBP eCLIP13.48□□□□□ -0.25
VAMP4-203ENST00000474047 FAAH2Q6GMR7 532 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 NIPAL1Q6NVV3 410 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 TMIGD1Q6UXZ0 262 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 LRRC70Q7Z2Q7 622 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 TMEM151BQ8IW70 566 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 GSPT2Q8IYD1 628 aaKnown RBP13.48□□□□□ -0.25
VAMP4-203ENST00000474047 ARHGEF39Q8N4T4 335 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 AMER3Q8N944 861 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 TTLQ8NG68 377 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 DCAKDQ8WVC6 231 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 MOCOSQ96EN8 888 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 ATOH8Q96SQ7 321 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 GPR83Q9NYM4 423 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 CPSF2Q9P2I0 782 aaKnown RBP13.48□□□□□ -0.25
VAMP4-203ENST00000474047 FBXL4Q9UKA2 621 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 MKL2Q9ULH7 1088 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 NAALAD2Q9Y3Q0 740 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 COL6A6A6NMZ7 2263 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 IGLV3-12A0A075B6K2 115 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 IDSB3KWA1 339 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 MAP2K7O14733 419 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 SLC28A2O43868 658 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 KLHL41O60662 606 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 KLHL18O94889 574 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 RBP1P09455 135 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 ACPPP15309 386 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 ALOX12P18054 663 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 NR1D1P20393 614 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 IRF8Q02556 426 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 LAPTM5Q13571 262 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 RAPSNQ13702 412 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 SLC29A2Q14542 456 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 PFKFB4Q16877 469 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 TUBB8Q3ZCM7 444 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 MINDY4Q4G0A6 757 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 DEFB134Q4QY38 66 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 PAGE2BQ5JRK9 111 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 PRSS41Q7RTY9 318 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 LAPTM4BQ86VI4 370 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 EIF1ADQ8N9N8 165 aaKnown RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 TEX19Q8NA77 164 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 OR51Q1Q8NH59 317 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 NT5CQ8TCD5 201 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 METTL21AQ8WXB1 218 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 PTCD3Q96EY7 689 aaKnown RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 PITHD1Q9GZP4 211 aaPredicted RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 PCDHGA9Q9Y5G4 932 aaKnown RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 HS3ST3B1Q9Y662 390 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 RDH16O75452 317 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 ZNF888P0CJ79 500 aaPredicted RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 ITGA3P26006 1051 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 HPDP32754 393 aaPredicted RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 XCR1P46094 333 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 AGTR2P50052 363 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 STXBP1P61764 594 aaKnown RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 AIMP2Q13155 320 aaKnown RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 CHIT1Q13231 466 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 TSNAXIP1Q2TAA8 658 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 TOR1AIP1Q5JTV8 583 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 KIRREL2Q6UWL6 708 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 GALNT16Q8N428 558 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 ANKRD53Q8N9V6 530 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 FDCSPQ8NFU4 85 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 UBLCP1Q8WVY7 318 aaPredicted RBP13.47□□□□□ -0.25
VAMP4-203ENST00000474047 MTBPQ96DY7 904 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 FAR2Q96K12 515 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 EFCAB11Q9BUY7 163 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 TGIF2Q9GZN2 237 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 EHD1Q9H4M9 534 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 ZNF451Q9Y4E5 1061 aa13.47□□□□□ -0.25
VAMP4-203ENST00000474047 FASNP49327 2511 aaKnown RBP13.46□□□□□ -0.25
VAMP4-203ENST00000474047 MED13Q9UHV7 2174 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 IQANK1A0A1B0GTG1 560 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 ZNF860A6NHJ4 632 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 K7EPI3 171 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 SOCS6O14544 535 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 BMP10O95393 424 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 ALPPP05187 535 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 SERPINA6P08185 405 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 COL6A2P12110 1019 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 EPB42P16452 691 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 ALDH18A1P54886 795 aaKnown RBP13.46□□□□□ -0.25
VAMP4-203ENST00000474047 RAB8AP61006 207 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 KLRB1Q12918 225 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 DOC2AQ14183 400 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 ATG14Q6ZNE5 492 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 MYLK4Q86YV6 388 aaPredicted RBP13.46□□□□□ -0.25
VAMP4-203ENST00000474047 ZC3H7AQ8IWR0 971 aaKnown RBP13.46□□□□□ -0.25
VAMP4-203ENST00000474047 PARP9Q8IXQ6 854 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.46□□□□□ -0.25
VAMP4-203ENST00000474047 TEX9Q8N6V9 391 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 NT5DC2Q9H857 520 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 ANAPC2Q9UJX6 822 aa13.46□□□□□ -0.25
VAMP4-203ENST00000474047 TNPO3Q9Y5L0 923 aaKnown RBP13.46□□□□□ -0.25
VAMP4-203ENST00000474047 K7EM74 188 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms