RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SCIMPQ6UWF3 145 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PXKQ7Z7A4 578 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 CEP97Q8IW35 865 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 ACER1Q8TDN7 264 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 EXOSC8Q96B26 276 aaKnown RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 SEZ6LQ9BYH1 1024 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 FZD4Q9ULV1 537 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 C2CD4BA6NLJ0 364 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 MEIS2O14770 477 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PTPN6P29350 595 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TAS2R50P59544 299 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 C6orf89Q6UWU4 347 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 YIPF4Q9BSR8 244 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 SMURF1Q9HCE7 757 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 HEBP1Q9NRV9 189 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 CCM2LQ9NUG4 571 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 F5H0A9 414 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 RDH16O75452 317 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 EDNRAP25101 427 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 HSPA7P48741 367 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 NOMO2Q5JPE7 1267 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF558Q96NG5 402 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 LATO43561 262 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 NT5EP21589 574 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 MTPNP58546 118 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 TLE2Q04725 743 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 LRRC66Q68CR7 880 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 SLC27A4Q6P1M0 643 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 C3orf33Q6P1S2 294 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 SLC16A9Q7RTY1 509 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 FUBP3Q96I24 572 aaKnown RBP eCLIP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 LIPT1Q9Y234 373 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 RGS9O75916 674 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 GSK3BP49841 420 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 RD3Q7Z3Z2 195 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 CLIP4Q8N3C7 705 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ACBD6Q9BR61 282 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 CENPOQ9BU64 300 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 AKTIPQ9H8T0 292 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF726A6NNF4 738 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 FAAHO00519 579 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 CCKBRP32239 447 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF529Q6P280 563 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ERLEC1Q96DZ1 483 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 CMTM7Q96FZ5 175 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF436Q9C0F3 470 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ACOT13Q9NPJ3 140 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 PEX14O75381 377 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 DLDP09622 509 aaKnown RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 FAM69AQ5T7M9 428 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 LINC00299Q6ZSB3 139 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF550Q7Z398 422 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 EIF5A2Q9GZV4 153 aaKnown RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 DNAJC5BQ9UF47 199 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 HRGP04196 525 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 RHCEP18577 417 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 MASP1P48740 699 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 HSPB3Q12988 150 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 UGT3A2Q3SY77 523 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 RNASE12Q5GAN4 147 aaKnown RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 BRAT1Q6PJG6 821 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 C16orf59Q7L2K0 433 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 OR2T33Q8NG76 320 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 RHEBL1Q8TAI7 183 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 SNAPC3Q92966 411 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 KREMEN1Q96MU8 473 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 NT5DC2Q9H857 520 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF878C9JN71 531 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ANKRD63C9JTQ0 380 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ARHGEF15O94989 841 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 CSNK2A2P19784 350 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 S1PR1P21453 382 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ICAM3P32942 547 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 MAGEA3P43357 314 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 PITPNBP48739 271 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 LASP1Q14847 261 aaKnown RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 LY6KQ17RY6 165 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 KCTD18Q6PI47 426 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-209ENST00000472056 HASPINQ8TF76 798 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF649Q9BS31 505 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 ANKRD31Q8N7Z5 1873 aa12.92□□□□□ -0.34
COL6A3-209ENST00000472056 TEX13DA0A0J9YY54 714 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 POLR1CO15160 346 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 NR4A2P43354 598 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CRISP1P54107 249 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 GSTM4Q03013 218 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CARTPTQ16568 116 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 HSDL2Q6YN16 418 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SAMD12Q8N8I0 201 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 LGALS12Q96DT0 336 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SECISBP2Q96T21 854 aaKnown RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ATF5Q9Y2D1 282 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 A0A075B6Q4 140 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ITPKAP23677 461 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 PPM1JQ5JR12 505 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 NAPRTQ6XQN6 538 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ANKRD46Q86W74 232 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SLC41A3Q96GZ6 507 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 TMED9Q9BVK6 235 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 MS4A12Q9NXJ0 267 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms