RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ITGAXP20702 1163 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 SERPINB3P29508 390 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 RBMS1P29558 406 aaKnown RBP14.08□□□□□ -0.16
COL9A3-209ENST00000469852 HNRNPH1P31943 449 aaKnown RBP14.08□□□□□ -0.16
COL9A3-209ENST00000469852 NAA20P61599 178 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 HIST2H2ACQ16777 129 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-209ENST00000469852 SGO1Q5FBB7 561 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 HIST2H2AA3Q6FI13 130 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 PRSS41Q7RTY9 318 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 TIPARPQ7Z3E1 657 aaKnown RBP14.08□□□□□ -0.16
COL9A3-209ENST00000469852 ZFAND4Q86XD8 727 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 GPR135Q8IZ08 494 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 TBC1D19Q8N5T2 526 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 METTL27Q8N6F8 245 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-209ENST00000469852 ZCCHC10Q8TBK6 192 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 NT5CQ8TCD5 201 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 AGR3Q8TD06 166 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 CCT6BQ92526 530 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 NXPE2Q96DL1 559 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 SORT1Q99523 831 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 TRMOQ9BU70 441 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 ASPSCR1Q9BZE9 553 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 ULBP3Q9BZM4 244 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 SLC6A16Q9GZN6 736 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 PITHD1Q9GZP4 211 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-209ENST00000469852 ACTR5Q9H9F9 607 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-209ENST00000469852 CUTCQ9NTM9 273 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 STK38LQ9Y2H1 464 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 PCDHB3Q9Y5E6 796 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 SCN3AQ9NY46 2000 aa14.08□□□□□ -0.16
COL9A3-209ENST00000469852 HYKKA2RU49 373 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 ANKDD1BA6NHY2 528 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 MAGEB17A8MXT2 336 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TMEM114B3SHH9 223 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 MANBAO00462 879 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 NVLO15381 856 aaKnown RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 FOXS1O43638 330 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 CLEC3AO75596 197 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 STK17BO94768 372 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TGFB1P01137 390 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 PDYNP01213 254 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 SLC35G6P0C7Q6 338 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 ATXN8OSP0DMR3 200 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 NEFHP12036 1026 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 SLC1A6P48664 564 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 ABCE1P61221 599 aaKnown RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 RPS13P62277 151 aaKnown RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 GPS2Q13227 327 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 STX3Q13277 289 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 PWP1Q13610 501 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 GRM7Q14831 915 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TOR1AIP1Q5JTV8 583 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 C1orf189Q5VU69 101 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 FRG2Q64ET8 278 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TTC19Q6DKK2 380 aaPredicted RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 LCN10Q6JVE6 187 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TMEM214Q6NUQ4 689 aaKnown RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TLDC1Q6P9B6 456 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 CYB5D1Q6P9G0 228 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 SCIMPQ6UWF3 145 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TTLL10Q6ZVT0 673 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 BPHLQ86WA6 291 aaPredicted RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TTC29Q8NA56 475 aaPredicted RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 CAMKVQ8NCB2 501 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TRPV3Q8NET8 790 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 METTL6Q8TCB7 284 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 SREK1Q8WXA9 508 aaKnown RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 UBE2E3Q969T4 207 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TEFMQ96QE5 360 aaKnown RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 FRG2BQ96QU4 278 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 F2RL3Q96RI0 385 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 ZPBPQ9BS86 351 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 MS4A8Q9BY19 250 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 SLC29A3Q9BZD2 475 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 DMRT3Q9NQL9 472 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 INTS9Q9NV88 658 aaKnown RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 ZDHHC2Q9UIJ5 367 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 FIS1Q9Y3D6 152 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TSC22D4Q9Y3Q8 395 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 TMEM184BQ9Y519 407 aaPredicted RBP14.07□□□□□ -0.16
COL9A3-209ENST00000469852 PCDHGA7Q9Y5G6 932 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 PCDHGA11Q9Y5H2 935 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 PTGDR2Q9Y5Y4 395 aa14.07□□□□□ -0.16
COL9A3-209ENST00000469852 A0A0G2JN53 185 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 LRIT2A6NDA9 550 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 SAP18O00422 153 aaKnown RBP14.06□□□□□ -0.16
COL9A3-209ENST00000469852 CPNE3O75131 537 aaKnown RBP14.06□□□□□ -0.16
COL9A3-209ENST00000469852 SNNO75324 88 aaPredicted RBP14.06□□□□□ -0.16
COL9A3-209ENST00000469852 HSPA4LO95757 839 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 ENO1P06733 434 aaKnown RBP14.06□□□□□ -0.16
COL9A3-209ENST00000469852 SERPINA6P08185 405 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 ZNF888P0CJ79 500 aaPredicted RBP14.06□□□□□ -0.16
COL9A3-209ENST00000469852 IL1RNP18510 177 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 GRK2P25098 689 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 HMOX2P30519 316 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 RORAP35398 523 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 SERPINB5P36952 375 aa14.06□□□□□ -0.16
COL9A3-209ENST00000469852 GALNT1Q10472 559 aaPredicted RBP14.06□□□□□ -0.16
COL9A3-209ENST00000469852 ABRAXAS2Q15018 415 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms