RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 STT3BQ8TCJ2 826 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 EPS8L3Q8TE67 593 aaKnown RBP16.78■□□□□ 0.28
VPS52-214ENST00000463486 THAP4Q8WY91 577 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 COL26A1Q96A83 441 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 PTCD3Q96EY7 689 aaKnown RBP16.78■□□□□ 0.28
VPS52-214ENST00000463486 MMABQ96EY8 250 aaPredicted RBP16.78■□□□□ 0.28
VPS52-214ENST00000463486 MESP1Q9BRJ9 268 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 SEMA4CQ9C0C4 833 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 TGIF2Q9GZN2 237 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 PITHD1Q9GZP4 211 aaPredicted RBP16.78■□□□□ 0.28
VPS52-214ENST00000463486 MRPL46Q9H2W6 279 aaKnown RBP16.78■□□□□ 0.28
VPS52-214ENST00000463486 RHBGQ9H310 441 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 KLHL31Q9H511 634 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 PPCSQ9HAB8 311 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 CPSF2Q9P2I0 782 aaKnown RBP16.78■□□□□ 0.28
VPS52-214ENST00000463486 OPTCQ9UBM4 332 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 PADI2Q9Y2J8 665 aa16.78■□□□□ 0.28
VPS52-214ENST00000463486 E2F3O00716 465 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 FFAR3O14843 346 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 CLGNO14967 610 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 GPR42O15529 346 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 B3GALT4O96024 378 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 SERPINA6P08185 405 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 ZGLP1P0C6A0 271 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 SLC35G6P0C7Q6 338 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 FAM87AP0C7U9 286 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 PYGBP11216 843 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 GFAPP14136 432 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 IL1RNP18510 177 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 FBLP22087 321 aaKnown RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 CXCR2P25025 360 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 MAT1AQ00266 395 aaKnown RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 CHIT1Q13231 466 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 LY6DQ14210 128 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 RBBP5Q15291 538 aaKnown RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 NDUFA9Q16795 377 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 XKR6Q5GH73 641 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 METTL2BQ6P1Q9 378 aaKnown RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 SHISA6Q6ZSJ9 500 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 LCA5Q86VQ0 697 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 APLFQ8IW19 511 aaPredicted RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.77■□□□□ 0.28
VPS52-214ENST00000463486 CNPY4Q8N129 248 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 MREGQ8N565 214 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 TEX9Q8N6V9 391 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 PTGR2Q8N8N7 351 aaPredicted RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 TRPV3Q8NET8 790 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 UTP15Q8TED0 518 aaKnown RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 APOBEC4Q8WW27 367 aaKnown RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 EFCAB11Q9BUY7 163 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 ZNF282Q9UDV7 671 aaPredicted RBP16.77■□□□□ 0.28
VPS52-214ENST00000463486 EMCNQ9ULC0 261 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 MAP4K5Q9Y4K4 846 aa16.77■□□□□ 0.28
VPS52-214ENST00000463486 SCN3AQ9NY46 2000 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 STX16-NPEPL1H3BU86 382 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 GOLGA8RI6L899 631 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 SGK494L7N484 410 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 STX16O14662 325 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 GALR3O60755 368 aaPredicted RBP16.76■□□□□ 0.27
VPS52-214ENST00000463486 H2AFYO75367 372 aaKnown RBP16.76■□□□□ 0.27
VPS52-214ENST00000463486 EPB42P16452 691 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 FOLR3P41439 243 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 CCR10P46092 362 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 POLE2P56282 527 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 KLC1Q07866 573 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 ADPRMQ3LIE5 342 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 CPZQ66K79 652 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 MRGPREQ86SM8 312 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 ZC3H7AQ8IWR0 971 aaKnown RBP16.76■□□□□ 0.27
VPS52-214ENST00000463486 LAS2Q8IYD9 372 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 TBC1D19Q8N5T2 526 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 ZCCHC10Q8TBK6 192 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 NACC2Q96BF6 587 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 SEC16BQ96JE7 1060 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 C1QTNF3Q9BXJ4 246 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 TRIM55Q9BYV6 548 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 SOX17Q9H6I2 414 aaPredicted RBP16.76■□□□□ 0.27
VPS52-214ENST00000463486 ZBTB26Q9HCK0 441 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 TRPC4Q9UBN4 977 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 NXT1Q9UKK6 140 aaKnown RBP16.76■□□□□ 0.27
VPS52-214ENST00000463486 NAALAD2Q9Y3Q0 740 aa16.76■□□□□ 0.27
VPS52-214ENST00000463486 LRIT2A6NDA9 550 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 A8MT66 165 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 SOCS6O14544 535 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 OR7A17O14581 309 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 CDH16O75309 829 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 CLEC3AO75596 197 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 KLHL18O94889 574 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 ZNF888P0CJ79 500 aaPredicted RBP16.75■□□□□ 0.27
VPS52-214ENST00000463486 ALOX12P18054 663 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 MMP11P24347 488 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 GSTM2P28161 218 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 HNRNPH1P31943 449 aaKnown RBP16.75■□□□□ 0.27
VPS52-214ENST00000463486 AVPR1BP47901 424 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 IRF8Q02556 426 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 ATP1A4Q13733 1029 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 GOLGA7Q7Z5G4 137 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 KRT78Q8N1N4 520 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 SLC39A7Q92504 469 aa16.75■□□□□ 0.27
VPS52-214ENST00000463486 PHF21BQ96EK2 531 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms