RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 BRINP2Q9C0B6 783 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 CWH43Q9H720 699 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 TM9SF3Q9HD45 589 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 CCL26Q9Y258 94 aa11.23□□□□□ -0.61
NPHP4-204ENST00000460696 FAM92AA1XBS5 289 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 ARNTLO00327 626 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 PDE9AO76083 593 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 CCNB2O95067 398 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 F11P03951 625 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 CTSCP53634 463 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 TBPL1P62380 186 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 CBLBQ13191 982 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 UAP1L1Q3KQV9 507 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 SLC36A3Q495N2 470 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 NHSL2Q5HYW2 709 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 DCST1Q5T197 706 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 CEACAM20Q6UY09 585 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 ZZZ3Q8IYH5 903 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 KBTBD8Q8NFY9 601 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 BTN2A2Q8WVV5 523 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 S100ZQ8WXG8 99 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 HDAC2Q92769 488 aaKnown RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 CXorf40BQ96DE9 158 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 TRMT2BQ96GJ1 504 aaKnown RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 PDLIM5Q96HC4 596 aaKnown RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF514Q96K75 400 aaPredicted RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 NTMT1Q9BV86 223 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 CEPT1Q9Y6K0 416 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 TRBC2A0A5B9 178 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 VILLO15195 856 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 UGT2B17O75795 530 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 C9P02748 559 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 SMIM18P0DKX4 95 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 C7P10643 843 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 PXNP49023 591 aaPredicted RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 VBP1P61758 197 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF763Q0D2J5 394 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 VITQ6UXI7 678 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 OR9A1PQ8NGU1 263 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 MAFAQ8NHW3 353 aaPredicted RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 SLC5A11Q8WWX8 675 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 HERC2P3Q9BVR0 1158 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 WDR12Q9GZL7 423 aaKnown RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 TRIT1Q9H3H1 467 aaKnown RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 ERVK-18Q9QC07 812 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 PCDHGA8Q9Y5G5 932 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 EFCAB9A8MZ26 197 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 H7BY64 318 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 BCHEP06276 602 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 CTSAP10619 480 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 ETFAP13804 333 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 PNLIPRP1P54315 467 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 MYBPC3Q14896 1274 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 ARMCX4Q5H9R4 360 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 PTCRAQ6ISU1 281 aaPredicted RBP11.22□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF554Q86TJ5 538 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 TRAM1L1Q8N609 369 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 PRAP1Q96NZ9 151 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 C1QTNF7Q9BXJ2 289 aa11.22□□□□□ -0.61
NPHP4-204ENST00000460696 GSAPA4D1B5 854 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 H7C0S8 307 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 TAPBPO15533 448 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 AP2A2O94973 939 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 MPC1LP0DKB6 136 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 ALPPL2P10696 532 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 PCSK6P29122 969 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 RAPSNQ13702 412 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 RUNDC3AQ59EK9 446 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 PRPF38BQ5VTL8 546 aaKnown RBP11.21□□□□□ -0.61
NPHP4-204ENST00000460696 KIAA1614Q5VZ46 1190 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 HTR3DQ70Z44 454 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 GATAD2AQ86YP4 633 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF683Q8IZ20 524 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 DEFB119Q8N690 84 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 FAM86B1Q8N7N1 296 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 OR7G3Q8NG95 312 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 MTERF3Q96E29 417 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 ZNF385DQ9H6B1 395 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 ABCD2Q9UBJ2 740 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 NEU3Q9UQ49 428 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 KCNK6Q9Y257 313 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 GLOD5A6NK44 160 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 ARHGEF33A8MVX0 844 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 PDPK1O15530 556 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 PAK4O96013 591 aaPredicted RBP11.21□□□□□ -0.61
NPHP4-204ENST00000460696 VIPP01282 170 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 ANXA8P13928 327 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 PCSK2P16519 638 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 FUT4P22083 530 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 IDSP22304 550 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 NOS3P29474 1203 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 DSTNP60981 165 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.21□□□□□ -0.61
NPHP4-204ENST00000460696 CATSPEREQ5SY80 951 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 BHLHB9Q6PI77 547 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 ARMCX6Q7L4S7 300 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 VRK3Q8IV63 474 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 HDDC3Q8N4P3 179 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 DPP10Q8N608 796 aa11.21□□□□□ -0.61
NPHP4-204ENST00000460696 TEFMQ96QE5 360 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms