RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PCOLCEQ15113 449 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 CRB2Q5IJ48 1285 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 NIPAL1Q6NVV3 410 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 KLHDC8AQ8IYD2 350 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 TCAIMQ8N3R3 496 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 SPATA6LQ8N4H0 392 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 PPM1NQ8N819 430 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 FBF1Q8TES7 1133 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 SNRNP40Q96DI7 357 aaKnown RBP20.06■□□□□ 0.8
HMGB3-205ENST00000455596 LMF1Q96S06 567 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 LRRC1Q9BTT6 524 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 C19orf25Q9UFG5 118 aaPredicted RBP20.06■□□□□ 0.8
HMGB3-205ENST00000455596 CSAG2Q9Y5P2 127 aa20.06■□□□□ 0.8
HMGB3-205ENST00000455596 CLEC18AA5D8T8 446 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 SERPINA7P05543 415 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 ICAM2P13598 275 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 CD1DP15813 335 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 ALOX12P18054 663 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 GNAZP19086 355 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 IL10P22301 178 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 SLC6A12P48065 614 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 GLRBP48167 497 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 RAB10P61026 200 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 AP2B1P63010 937 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 MFAP5Q13361 173 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 NAB1Q13506 487 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 RBBP5Q15291 538 aaKnown RBP20.05■□□□□ 0.8
HMGB3-205ENST00000455596 ZKSCAN8Q15776 578 aaPredicted RBP20.05■□□□□ 0.8
HMGB3-205ENST00000455596 WHAMMP3Q1A5X7 153 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 C18orf21Q32NC0 220 aaPredicted RBP20.05■□□□□ 0.8
HMGB3-205ENST00000455596 CLEC18BQ6UXF7 455 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 LINC00696Q6ZRV3 163 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 RIPOR1Q6ZS17 1223 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 ABHD13Q7L211 337 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 CUZD1Q86UP6 607 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 AFAP1L2Q8N4X5 818 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 FAM26EQ8N5C1 309 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 CISD2Q8N5K1 135 aaKnown RBP20.05■□□□□ 0.8
HMGB3-205ENST00000455596 CLEC18CQ8NCF0 446 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 TRPV3Q8NET8 790 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 DNAJB14Q8TBM8 379 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 CYTH2Q99418 400 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 TUBB6Q9BUF5 446 aa20.05■□□□□ 0.8
HMGB3-205ENST00000455596 ESYT3A0FGR9 886 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 URADA6NGE7 173 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 ZNF860A6NHJ4 632 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 GALR3O60755 368 aaPredicted RBP20.04■□□□□ 0.8
HMGB3-205ENST00000455596 UQCRHP07919 91 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 C1GALT1C1LP0DN25 315 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 GDF5P43026 501 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 AGTR2P50052 363 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 DEFB134Q4QY38 66 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 CPEB2Q7Z5Q1 589 aaKnown RBP20.04■□□□□ 0.8
HMGB3-205ENST00000455596 GPSM1Q86YR5 675 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 SHISA5Q8N114 240 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 ANKRD53Q8N9V6 530 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 BRIX1Q8TDN6 353 aaKnown RBP20.04■□□□□ 0.8
HMGB3-205ENST00000455596 C19orf60Q96EN9 201 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 PEX11GQ96HA9 241 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 CNDP1Q96KN2 507 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 OR1F2PQ96R84 312 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 CAPS2Q9BXY5 557 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 CNOT10Q9H9A5 744 aaKnown RBP20.04■□□□□ 0.8
HMGB3-205ENST00000455596 ASF1BQ9NVP2 202 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 WWOXQ9NZC7 414 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 PTGFRNQ9P2B2 879 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 PCDHGA10Q9Y5H3 936 aa20.04■□□□□ 0.8
HMGB3-205ENST00000455596 ESPL1Q14674 2120 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 TCP11X1B4DZS4 312 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 H2AFYO75367 372 aaKnown RBP20.03■□□□□ 0.8
HMGB3-205ENST00000455596 FAM155BO75949 473 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 WFS1O76024 890 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 ZNF888P0CJ79 500 aaPredicted RBP20.03■□□□□ 0.8
HMGB3-205ENST00000455596 SRSF1Q07955 248 aaKnown RBP eCLIP20.03■□□□□ 0.8
HMGB3-205ENST00000455596 SLMAPQ14BN4 828 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 CDKL4Q5MAI5 379 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 SULT1C3Q6IMI6 304 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 LANCL3Q6ZV70 420 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 RAPH1Q70E73 1250 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 SIRT6Q8N6T7 355 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 OR5T3Q8NGG3 340 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 UTP15Q8TED0 518 aaKnown RBP20.03■□□□□ 0.8
HMGB3-205ENST00000455596 PSMF1Q92530 271 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 ZNF592Q92610 1267 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 UBXN10Q96LJ8 280 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 IMMP1LQ96LU5 166 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 TMEM79Q9BSE2 394 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 SLC6A16Q9GZN6 736 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 GPRC5BQ9NZH0 403 aa20.03■□□□□ 0.8
HMGB3-205ENST00000455596 COPG1Q9Y678 874 aaKnown RBP20.03■□□□□ 0.8
HMGB3-205ENST00000455596 TAPBPO15533 448 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 CELA2AP08217 269 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 SOX11P35716 441 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 GGT5P36269 586 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 GUCY2DQ02846 1103 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 CDC16Q13042 620 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 ZNF169Q14929 603 aaPredicted RBP20.02■□□□□ 0.8
HMGB3-205ENST00000455596 TLR1Q15399 786 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 OR4D1Q15615 310 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 SLCO4C1Q6ZQN7 724 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms