RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 NETO1Q8TDF5 533 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 COQ7Q99807 217 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 RAB11FIP5Q9BXF6 653 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 SLC22A4Q9H015 551 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 SP140LQ9H930 580 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 RDH14Q9HBH5 336 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 NME7Q9Y5B8 376 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 NUMBLQ9Y6R0 609 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 CCR4P51679 360 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 STXBP1P61764 594 aaKnown RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 TMEM115Q12893 351 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 C5orf22Q49AR2 442 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 FRS2Q8WU20 508 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 SMPDL3AQ92484 453 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 SLC30A2Q9BRI3 323 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 TRPV5Q9NQA5 729 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 MGAT4BQ9UQ53 548 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 UBFD1O14562 309 aaKnown RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 TLL1O43897 1013 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 GNRH1P01148 92 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 NHSL2Q5HYW2 709 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 CNKSR3Q6P9H4 555 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 PRSS48Q7RTY5 328 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 CYB5D2Q8WUJ1 264 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 NTMT1Q9BV86 223 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 TDP1Q9NUW8 608 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 COLEC10Q9Y6Z7 277 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 GBAP04062 536 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 RB1P06400 928 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 SAGP10523 405 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 TYRP14679 529 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 NCBP2P52298 156 aaKnown RBP eCLIP16.07■□□□□ 0.161e-8■■□□□ 13.6
TCOF1-206ENST00000445265 FAM220AQ7Z4H9 259 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 SCRN2Q96FV2 425 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 TMEM27Q9HBJ8 222 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 MAT2BQ9NZL9 334 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 FBXO10Q9UK96 956 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 MRPS14O60783 128 aaKnown RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 BCAS1O75363 584 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 CHRM5P08912 532 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 PORP16435 677 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 SLC6A4P31645 630 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 ARRB2P32121 409 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 STK19P49842 368 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 CDK5R2Q13319 367 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 ZNF367Q7RTV3 350 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 SPARTQ8N0X7 666 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 TRAM1L1Q8N609 369 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-206ENST00000445265 ING5Q8WYH8 240 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 ZNF222Q9UK12 451 aa16.07■□□□□ 0.16
TCOF1-206ENST00000445265 GSAPA4D1B5 854 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 CCRL2O00421 344 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 OR1E2P47887 323 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 SMSP52788 366 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 RAPSNQ13702 412 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 TRIM71Q2Q1W2 868 aaKnown RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 IRAK1BP1Q5VVH5 260 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 DCP2Q8IU60 420 aaKnown RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 PEX5LQ8IYB4 626 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 FAM129BQ96TA1 746 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 TBC1D17Q9HA65 648 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 ABCD2Q9UBJ2 740 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 BOLA2-SMG1P6H3BVE0 249 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 SSNA1O43805 119 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 SMIM18P0DKX4 95 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 ARSAP15289 507 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 ITIH1P19827 911 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 DPP6P42658 865 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 OTOP2Q7RTS6 562 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 RANBP3LQ86VV4 465 aaPredicted RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 DPH2Q9BQC3 489 aaPredicted RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 OSER1Q9NX31 292 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 MS4A12Q9NXJ0 267 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 MRPL39Q9NYK5 338 aaKnown RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 PHF11Q9UIL8 331 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 OR10H1Q9Y4A9 318 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 KIF13BQ9NQT8 1826 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 TSPAN6O43657 245 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 PSIP1O75475 530 aaKnown RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 ALPPP05187 535 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 CSNK2A2P19784 350 aaPredicted RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 PPIGQ13427 754 aaKnown RBP eCLIP16.06■□□□□ 0.162e-7■■□□□ 13.8
TCOF1-206ENST00000445265 PGBD5Q8N414 524 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 TFGQ92734 400 aaPredicted RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 GLYATL1Q969I3 302 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 ITPKCQ96DU7 683 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 C12orf66Q96MD2 445 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 MYOCQ99972 504 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 TTLL2Q9BWV7 592 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 CTPS2Q9NRF8 586 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 FARSBQ9NSD9 589 aaKnown RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 SEC14L4Q9UDX3 406 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 PCDHGA8Q9Y5G5 932 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 LSM1O15116 133 aaKnown RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 MITFO75030 526 aaPredicted RBP16.06■□□□□ 0.16
TCOF1-206ENST00000445265 DNTTP04053 509 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 PSMA3P25788 255 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 RGRP47804 291 aa16.06■□□□□ 0.16
TCOF1-206ENST00000445265 CXorf57Q6NSI4 855 aaKnown RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms