RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 SERGEFQ9UGK8 458 aa9.12□□□□□ -0.95
CUX1-206ENST00000437600 ZNF639Q9UID6 485 aa9.12□□□□□ -0.95
CUX1-206ENST00000437600 CCDC88CQ9P219 2028 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 DYTNA2CJ06 578 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 H3BM21 787 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 J3QRK9 145 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 HTR1AP08908 422 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CBSLP0DN79 551 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 JUPP14923 745 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CD72P21854 359 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CBSP35520 551 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 TIE1P35590 1138 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CRATP43155 626 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 MAP2K4P45985 399 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 MRPL19P49406 292 aaKnown RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 PPP2R2BQ00005 443 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CNTN1Q12860 1018 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 ADRM1Q16186 407 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 KCTD21Q4G0X4 260 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CCDC81Q6ZN84 652 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 PIWIL3Q7Z3Z3 882 aaKnown RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 SNX29P2Q8IUI4 249 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 PLD3Q8IV08 490 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 C8orf59Q8N0T1 100 aaPredicted RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 L3MBTL4Q8NA19 623 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 FBXL8Q96CD0 374 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 THAP11Q96EK4 314 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CMTM7Q96FZ5 175 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 RMND5AQ9H871 391 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 PDP1Q9P0J1 537 aaPredicted RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 FZD4Q9ULV1 537 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 WDR37Q9Y2I8 494 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 MGAT4DA6NG13 374 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 M0R129 80 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 ERN1O75460 977 aaKnown RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 SLCO2B1O94956 709 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 PRNPP04156 253 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 SRPRAP08240 638 aaKnown RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 CRHBPP24387 322 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 GPR1P46091 355 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CD97P48960 835 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 DAPP51397 102 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 CCR3P51677 355 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 TUBA4AP68366 448 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 RAE1P78406 368 aaKnown RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 ELAVL3Q14576 367 aaKnown RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 DPY19L1Q2PZI1 675 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 ZNF385BQ569K4 471 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 C6orf141Q5SZD1 244 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 DPPA4Q7L190 304 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 LRRC70Q7Z2Q7 622 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 HMGN2P46Q86SG4 172 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 ERI1Q8IV48 349 aaKnown RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 DEFB123Q8N688 67 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 ZNF557Q8N988 423 aaPredicted RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 SMYD1Q8NB12 490 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 WDR48Q8TAF3 677 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 WDR20Q8TBZ3 569 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 FNDC8Q8TC99 324 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 UBTD2Q8WUN7 234 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 PPP1R14BQ96C90 147 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 MACROD1Q9BQ69 325 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 ABCG4Q9H172 646 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 DYRK4Q9NR20 520 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 INIPQ9NRY2 104 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 SIRT5Q9NXA8 310 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 GDE1Q9NZC3 331 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 SPASTQ9UBP0 616 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 TMEFF2Q9UIK5 374 aaPredicted RBP9.11□□□□□ -0.95
CUX1-206ENST00000437600 PADI4Q9UM07 663 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 SLC27A6Q9Y2P4 619 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 DENND4AQ7Z401 1863 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 LRRK1Q38SD2 2015 aa9.11□□□□□ -0.95
CUX1-206ENST00000437600 A0A096LPI6 279 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 C2CD4DB7Z1M9 353 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 NPC1O15118 1278 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 MID1O15344 667 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 PCDH8O95206 1070 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 SOD1P00441 154 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 ETFAP13804 333 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 NPPBP16860 134 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 HOXD11P31277 338 aaPredicted RBP9.1□□□□□ -0.95
CUX1-206ENST00000437600 TGFBR1P36897 503 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 SLC19A1P41440 591 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 HNMTP50135 292 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 RPS26P62854 115 aaKnown RBP9.1□□□□□ -0.95
CUX1-206ENST00000437600 GAB1Q13480 694 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 PRSS53Q2L4Q9 553 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 XAF1Q6GPH4 301 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.1□□□□□ -0.95
CUX1-206ENST00000437600 PTOV1Q86YD1 416 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 EID3Q8N140 333 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 TRAM1L1Q8N609 369 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 CHDHQ8NE62 594 aaPredicted RBP9.1□□□□□ -0.95
CUX1-206ENST00000437600 TNIP2Q8NFZ5 429 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 SH3GL1Q99961 368 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 ZSCAN5AQ9BUG6 496 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 DUSP26Q9BV47 211 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 LGR4Q9BXB1 951 aa9.1□□□□□ -0.95
CUX1-206ENST00000437600 SLC7A5P2Q9GIP4 190 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms