RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 KRT36O76013 467 aa2.53□□□□□ -2
VPS41-206ENST00000418457 RSL1D1O76021 490 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 PENKP01210 267 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 IL1BP01584 269 aa2.53□□□□□ -2
VPS41-206ENST00000418457 NR3C1P04150 777 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SHBGP04278 402 aa2.53□□□□□ -2
VPS41-206ENST00000418457 KRT16P08779 473 aa2.53□□□□□ -2
VPS41-206ENST00000418457 TPBGLP0DKB5 382 aa2.53□□□□□ -2
VPS41-206ENST00000418457 TROVE2P10155 538 aaKnown RBP eCLIP2.53□□□□□ -2
VPS41-206ENST00000418457 MYBL1P10243 752 aa2.53□□□□□ -2
VPS41-206ENST00000418457 MMP9P14780 707 aa2.53□□□□□ -2
VPS41-206ENST00000418457 ZNF23P17027 643 aa2.53□□□□□ -2
VPS41-206ENST00000418457 AMD1P17707 334 aa2.53□□□□□ -2
VPS41-206ENST00000418457 CYP11B2P19099 503 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SAT1P21673 171 aa2.53□□□□□ -2
VPS41-206ENST00000418457 KCNA5P22460 613 aa2.53□□□□□ -2
VPS41-206ENST00000418457 MARK3P27448 753 aa2.53□□□□□ -2
VPS41-206ENST00000418457 RPA1P27694 616 aa2.53□□□□□ -2
VPS41-206ENST00000418457 PTPN4P29074 926 aa2.53□□□□□ -2
VPS41-206ENST00000418457 ACSL1P33121 698 aa2.53□□□□□ -2
VPS41-206ENST00000418457 COILP38432 576 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 CETN2P41208 172 aa2.53□□□□□ -2
VPS41-206ENST00000418457 EIF2DP41214 584 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 SLC1A1P43005 524 aa2.53□□□□□ -2
VPS41-206ENST00000418457 PSMC4P43686 418 aa2.53□□□□□ -2
VPS41-206ENST00000418457 RPL21P46778 160 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 IFNAR2P48551 515 aa2.53□□□□□ -2
VPS41-206ENST00000418457 NRIP1P48552 1158 aa2.53□□□□□ -2
VPS41-206ENST00000418457 FMO5P49326 533 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SNRPFP62306 86 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 PITX1P78337 314 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 IFI35P80217 286 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 XIAPP98170 497 aa2.53□□□□□ -2
VPS41-206ENST00000418457 PPP2R2BQ00005 443 aa2.53□□□□□ -2
VPS41-206ENST00000418457 RUNX1T1Q06455 604 aa2.53□□□□□ -2
VPS41-206ENST00000418457 ILF3Q12906 894 aaKnown RBP eCLIP2.53□□□□□ -2
VPS41-206ENST00000418457 UBE2V1Q13404 147 aa2.53□□□□□ -2
VPS41-206ENST00000418457 PTK6Q13882 451 aa2.53□□□□□ -2
VPS41-206ENST00000418457 KRT33BQ14525 404 aa2.53□□□□□ -2
VPS41-206ENST00000418457 CCDC6Q16204 474 aa2.53□□□□□ -2
VPS41-206ENST00000418457 PDK4Q16654 411 aa2.53□□□□□ -2
VPS41-206ENST00000418457 ZNF718Q3SXZ3 478 aa2.53□□□□□ -2
VPS41-206ENST00000418457 LRRC23Q53EV4 343 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 STXBP5Q5T5C0 1151 aa2.53□□□□□ -2
VPS41-206ENST00000418457 C6orf163Q5TEZ5 329 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SUSD4Q5VX71 490 aa2.53□□□□□ -2
VPS41-206ENST00000418457 FAM91A1Q658Y4 838 aa2.53□□□□□ -2
VPS41-206ENST00000418457 FAM171BQ6P995 826 aa2.53□□□□□ -2
VPS41-206ENST00000418457 C15orf52Q6ZUT6 534 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 FOXL2NBQ6ZUU3 175 aa2.53□□□□□ -2
VPS41-206ENST00000418457 ZNF534Q76KX8 674 aa2.53□□□□□ -2
VPS41-206ENST00000418457 ARHGAP22Q7Z5H3 698 aa2.53□□□□□ -2
VPS41-206ENST00000418457 PHLDB2Q86SQ0 1253 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SLC9B2Q86UD5 537 aa2.53□□□□□ -2
VPS41-206ENST00000418457 GPBP1Q86WP2 473 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SLC13A5Q86YT5 568 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 GALNT13Q8IUC8 556 aa2.53□□□□□ -2
VPS41-206ENST00000418457 CEP97Q8IW35 865 aa2.53□□□□□ -2
VPS41-206ENST00000418457 NELFCDQ8IXH7 590 aa2.53□□□□□ -2
VPS41-206ENST00000418457 METTL27Q8N6F8 245 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 C1orf52Q8N6N3 182 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 PRELID2Q8N945 189 aa2.53□□□□□ -2
VPS41-206ENST00000418457 CCDC89Q8N998 374 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SYT2Q8N9I0 419 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 CNBD1Q8NA66 436 aa2.53□□□□□ -2
VPS41-206ENST00000418457 STKLD1Q8NE28 680 aa2.53□□□□□ -2
VPS41-206ENST00000418457 LRRC8CQ8TDW0 803 aa2.53□□□□□ -2
VPS41-206ENST00000418457 TEKT4Q8WW24 435 aa2.53□□□□□ -2
VPS41-206ENST00000418457 PIGBQ92521 554 aa2.53□□□□□ -2
VPS41-206ENST00000418457 KIFAP3Q92845 792 aa2.53□□□□□ -2
VPS41-206ENST00000418457 STMN2Q93045 179 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SLC35C1Q96A29 364 aa2.53□□□□□ -2
VPS41-206ENST00000418457 PHF21AQ96BD5 680 aa2.53□□□□□ -2
VPS41-206ENST00000418457 LINGO1Q96FE5 620 aa2.53□□□□□ -2
VPS41-206ENST00000418457 EEF2KMTQ96G04 330 aa2.53□□□□□ -2
VPS41-206ENST00000418457 CEP295NLQ96MC4 621 aa2.53□□□□□ -2
VPS41-206ENST00000418457 FAM20AQ96MK3 541 aa2.53□□□□□ -2
VPS41-206ENST00000418457 CFAP57Q96MR6 1250 aa2.53□□□□□ -2
VPS41-206ENST00000418457 MBOAT7Q96N66 472 aa2.53□□□□□ -2
VPS41-206ENST00000418457 NUDT16L1Q9BRJ7 211 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 CENPKQ9BS16 269 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SYT11Q9BT88 431 aa2.53□□□□□ -2
VPS41-206ENST00000418457 POLR3CQ9BUI4 534 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 YIPF3Q9GZM5 350 aa2.53□□□□□ -2
VPS41-206ENST00000418457 NYXQ9GZU5 481 aa2.53□□□□□ -2
VPS41-206ENST00000418457 CDC42EP4Q9H3Q1 356 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 OSGEPL1Q9H4B0 414 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SIX2Q9NPC8 291 aa2.53□□□□□ -2
VPS41-206ENST00000418457 ARHGEF38Q9NXL2 777 aa2.53□□□□□ -2
VPS41-206ENST00000418457 RCC2Q9P258 522 aaKnown RBP2.53□□□□□ -2
VPS41-206ENST00000418457 MARCH4Q9P2E8 410 aaPredicted RBP2.53□□□□□ -2
VPS41-206ENST00000418457 KLHL9Q9P2J3 617 aa2.53□□□□□ -2
VPS41-206ENST00000418457 WDR35Q9P2L0 1181 aa2.53□□□□□ -2
VPS41-206ENST00000418457 CIDEBQ9UHD4 219 aa2.53□□□□□ -2
VPS41-206ENST00000418457 POLG2Q9UHN1 485 aa2.53□□□□□ -2
VPS41-206ENST00000418457 SLC24A2Q9UI40 661 aa2.53□□□□□ -2
VPS41-206ENST00000418457 GTF3C4Q9UKN8 822 aa2.53□□□□□ -2
VPS41-206ENST00000418457 ANGPTL2Q9UKU9 493 aa2.53□□□□□ -2
VPS41-206ENST00000418457 TMCO1Q9UM00 188 aa2.53□□□□□ -2
VPS41-206ENST00000418457 STX8Q9UNK0 236 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms