RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CHST10O43529 356 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 CRYABP02511 175 aaKnown RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 ZNF888P0CJ79 500 aaPredicted RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 SAT1P21673 171 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 BTG2P78543 158 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 OR1C1Q15619 314 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 C3AR1Q16581 482 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 HECTD2Q5U5R9 776 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 ZNF468Q5VIY5 522 aaPredicted RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 H3F3CQ6NXT2 135 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 TRMT10BQ6PF06 316 aaKnown RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 MRGPRGQ86SM5 289 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 MCEMP1Q8IX19 187 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 CYP4X1Q8N118 509 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 MDS2Q8NDY4 140 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 THAP11Q96EK4 314 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 SNF8Q96H20 258 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 ZNF354BQ96LW1 612 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 WDR83Q9BRX9 315 aaKnown RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 PCBD2Q9H0N5 130 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 RHBGQ9H310 441 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 CDCP1Q9H5V8 836 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 C19orf25Q9UFG5 118 aaPredicted RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 TEKT2Q9UIF3 430 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 CHMP2BQ9UQN3 213 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 ENTPD4Q9Y227 616 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 DIDO1Q9BTC0 2240 aaKnown RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 FBN2P35556 2912 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 ENO4A6NNW6 628 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 GABRR3A8MPY1 467 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 C4orf51C9J302 202 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 NPIPA5E9PKD4 350 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 EIF3FO00303 357 aaPredicted RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 SLC16A5O15375 505 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 GALR3O60755 368 aaPredicted RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 HIST1H2AGP0C0S8 130 aaPredicted RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 SLC35G6P0C7Q6 338 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 HIST1H2ADP20671 130 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 GRK3P35626 688 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 ELK3P41970 407 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 CA7P43166 264 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 FNTAP49354 379 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 CCR8P51685 355 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 OR4D2P58180 307 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 IL2P60568 153 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 RAB8AP61006 207 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 HSF1Q00613 529 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 OC90Q02509 493 aaPredicted RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 SP140Q13342 867 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 PDAP1Q13442 181 aaKnown RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 ZNF460Q14592 562 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 USP10Q14694 798 aaKnown RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 CDSNQ15517 529 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 C18orf21Q32NC0 220 aaPredicted RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 SPANXN3Q5MJ09 141 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 TEDDM1Q5T9Z0 273 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 ANKMY2Q8IV38 441 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 OR56A3Q8NH54 315 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 DNAJB8Q8NHS0 232 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 M1APQ8TC57 530 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 GRK7Q8WTQ7 553 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 NEIL2Q969S2 332 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 CERS2Q96G23 380 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 HIST1H2AHQ96KK5 128 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 HIST1H2AJQ99878 128 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 UTP23Q9BRU9 249 aaKnown RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 H2AFJQ9BTM1 129 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 KLHL31Q9H511 634 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 TRMT1Q9NXH9 659 aaKnown RBP10.88□□□□□ -0.67
USP4-204ENST00000416417 NPIPA1Q9UND3 350 aa10.88□□□□□ -0.67
USP4-204ENST00000416417 CDC7O00311 574 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 TTI1O43156 1089 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 SLC19A2O60779 497 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 FHP07954 510 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 MAOAP21397 527 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 AGTR2P50052 363 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 SLC26A5P58743 744 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 AP2B1P63010 937 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 ADORA2A-AS1P86434 159 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 HYAL2Q12891 473 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 MEP1AQ16819 746 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 DUPD1Q68J44 220 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 LRRC8EQ6NSJ5 796 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 C3P1Q6ZMU1 363 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 GALNTL5Q7Z4T8 443 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.87□□□□□ -0.67
USP4-204ENST00000416417 SLC34A3Q8N130 599 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 AFAP1L2Q8N4X5 818 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 ANKRD53Q8N9V6 530 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 PLPP5Q8NEB5 264 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 ABHD11Q8NFV4 315 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 OR4K1Q8NGD4 311 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 ACTRT1Q8TDG2 376 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 SREK1Q8WXA9 508 aaKnown RBP10.87□□□□□ -0.67
USP4-204ENST00000416417 FBXL8Q96CD0 374 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 NAP1L3Q99457 506 aaPredicted RBP10.87□□□□□ -0.67
USP4-204ENST00000416417 HAUS8Q9BT25 410 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 MMP25Q9NPA2 562 aa10.87□□□□□ -0.67
USP4-204ENST00000416417 SUCOQ9UBS9 1254 aaKnown RBP10.87□□□□□ -0.67
USP4-204ENST00000416417 SNX12Q9UMY4 172 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms