RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ATP6AP1LQ52LC2 224 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 KHDRBS2Q5VWX1 349 aaKnown RBP13.61□□□□□ -0.23
SF3B1-204ENST00000414963 ASPGQ86U10 573 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 ZFAND4Q86XD8 727 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 SLITRK4Q8IW52 837 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 CAMKVQ8NCB2 501 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 CHTF18Q8WVB6 975 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 SLC13A3Q8WWT9 602 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 FCRL1Q96LA6 429 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 SLC6A16Q9GZN6 736 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 ASIC5Q9NY37 505 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 HEY2Q9UBP5 337 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 SLC12A4Q9UP95 1085 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 TRIM33Q9UPN9 1127 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 TMED5Q9Y3A6 229 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 RP1P56715 2156 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 LOC105369274A0A096LPK9 316 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 LOC102723532A0A0G2JNH3 316 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 A0A0J9YVX5 310 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 TXNDC9O14530 226 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 PEX11AO75192 247 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 CDK4P11802 303 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 MLLT3P42568 568 aaPredicted RBP13.6□□□□□ -0.23
SF3B1-204ENST00000414963 MRPL19P49406 292 aaKnown RBP13.6□□□□□ -0.23
SF3B1-204ENST00000414963 STXBP1P61764 594 aaKnown RBP13.6□□□□□ -0.23
SF3B1-204ENST00000414963 CYP4F2P78329 520 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 CYP4F3Q08477 520 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 MAD2L1Q13257 205 aaPredicted RBP13.6□□□□□ -0.23
SF3B1-204ENST00000414963 SPIDRQ14159 915 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 RFTN2Q52LD8 501 aaPredicted RBP13.6□□□□□ -0.23
SF3B1-204ENST00000414963 SPIN4Q56A73 249 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 SPDYAQ5MJ70 313 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 NXNQ6DKJ4 435 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 FRMPD2BQ6IN97 320 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 GALNT18Q6P9A2 607 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 OR4N4Q8N0Y3 316 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 METTL4Q8N3J2 472 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 RERGQ96A58 199 aaPredicted RBP13.6□□□□□ -0.23
SF3B1-204ENST00000414963 FCRL4Q96PJ5 515 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 OR51B5Q9H339 312 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 MRGBPQ9NV56 204 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 AHSPQ9NZD4 102 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 KLHL3Q9UH77 587 aa13.6□□□□□ -0.23
SF3B1-204ENST00000414963 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 TM4SF5O14894 197 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 UBDO15205 165 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 ZSCAN9O15535 394 aaPredicted RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 NDUFS4O43181 175 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 HCRTR1O43613 425 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 CCDC22O60826 627 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 SEC22BO75396 215 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 SNRNP200O75643 2136 aaKnown RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 RFPL3O75679 317 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 DKK1O94907 266 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 SLC35G6P0C7Q6 338 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 SMIM10L1P0DMW3 83 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 CSRP1P21291 193 aaKnown RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 HNRNPH1P31943 449 aaKnown RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 ARL4DP49703 201 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 ATP4BP51164 291 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 EMP3P54852 163 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 RGS1Q08116 209 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 TRIP6Q15654 476 aaKnown RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 PRTGQ2VWP7 1150 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 TCTE1Q5JU00 501 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 TMTC4Q5T4D3 741 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 UBE3DQ7Z6J8 389 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 ARHGEF39Q8N4T4 335 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 CPSF7Q8N684 471 aaKnown RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 ZNF655Q8N720 491 aaPredicted RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 SRFBP1Q8NEF9 429 aaKnown RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 OR2L5Q8NG80 312 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 RGMAQ96B86 450 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 MS4A6EQ96DS6 147 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 APIPQ96GX9 242 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 SMIM10Q96HG1 83 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 CCDC74BQ96LY2 380 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 F2RL3Q96RI0 385 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 CENPKQ9BS16 269 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 AICDAQ9GZX7 198 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 ZMYND15Q9H091 742 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 MYLK2Q9H1R3 596 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 ZNF385DQ9H6B1 395 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 SOHLH2Q9NX45 425 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 TOR4AQ9NXH8 423 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 GIMAP2Q9UG22 337 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 ADAM29Q9UKF5 820 aa13.59□□□□□ -0.23
SF3B1-204ENST00000414963 RUVBL1Q9Y265 456 aaKnown RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 RIF1Q5UIP0 2472 aaKnown RBP13.59□□□□□ -0.23
SF3B1-204ENST00000414963 FITM1A5D6W6 292 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 E9PBE3 544 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 H3BMH7 237 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 P2RX6O15547 441 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 KLHL41O60662 606 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 DCTN3O75935 186 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 ALDOCP09972 364 aaKnown RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 IDO1P14902 403 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 ADSLP30566 484 aaPredicted RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 CCKBRP32239 447 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 TSFMP43897 325 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms