RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 DCAF7P61962 342 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 SLC25A11Q02978 314 aaKnown RBP6.21□□□□□ -1.41
USP40-202ENST00000409945 DPYSQ14117 519 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 BAK1Q16611 211 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 CA9Q16790 459 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 LRRC38Q5VT99 294 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 GALNT7Q86SF2 657 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 VSIG1Q86XK7 387 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 NAXDQ8IW45 347 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 SLC16A11Q8NCK7 471 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 DENND6BQ8NEG7 585 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 OR6K2Q8NGY2 324 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 DPF1Q92782 380 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 FAM131CQ96AQ9 280 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 C5orf34Q96MH7 638 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 PEBP4Q96S96 227 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 CHP1Q99653 195 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 SLC17A9Q9BYT1 436 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 CXorf56Q9H5V9 222 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 ERVMER34-1Q9H9K5 563 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 KLHL13Q9P2N7 655 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 AMACRQ9UHK6 382 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 NEU3Q9UQ49 428 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 CACNA1EQ15878 2313 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 NEMP2A6NFY4 417 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 WIPF3A6NGB9 483 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 ZNF487B1APH4 448 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 J3KR12 359 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 LDLRAD4O15165 306 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 TNFSF14O43557 240 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 ZNF189O75820 626 aaPredicted RBP6.21□□□□□ -1.42
USP40-202ENST00000409945 MTA2O94776 668 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 SLU7O95391 586 aaKnown RBP6.21□□□□□ -1.42
USP40-202ENST00000409945 PLAUP00749 431 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 THEGLP0DJG4 465 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 CDK4P11802 303 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 MMP13P45452 471 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 RABIFP47224 123 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 THOP1P52888 689 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 TFDP2Q14188 446 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 KIF19Q2TAC6 998 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 ASTE1Q2TB18 679 aaPredicted RBP6.21□□□□□ -1.42
USP40-202ENST00000409945 ANKRD20A8PQ5CZ79 823 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 FCRLBQ6BAA4 426 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 SYT10Q6XYQ8 523 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 PTAR1Q7Z6K3 402 aaPredicted RBP6.21□□□□□ -1.42
USP40-202ENST00000409945 KIAA1328Q86T90 577 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 ARFGAP1Q8N6T3 406 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 CCNYQ8ND76 341 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 DEFB124Q8NES8 71 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 RFWD2Q8NHY2 731 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 ZNF398Q8TD17 642 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 ZFPM2Q8WW38 1151 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 ANKRD7Q92527 254 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 PSKH2Q96QS6 385 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 BARD1Q99728 777 aaKnown RBP6.21□□□□□ -1.42
USP40-202ENST00000409945 CHCHD6Q9BRQ6 235 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 TRIM2Q9C040 744 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 POLR1EQ9GZS1 481 aaKnown RBP6.21□□□□□ -1.42
USP40-202ENST00000409945 DNPEPQ9ULA0 475 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 DTX4Q9Y2E6 619 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 TTLL3Q9Y4R7 772 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 FADS3Q9Y5Q0 445 aa6.21□□□□□ -1.42
USP40-202ENST00000409945 PLK4O00444 970 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 PSTPIP1O43586 416 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 SOCS5O75159 536 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 ZNF821O75541 412 aaPredicted RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 WNT1P04628 370 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 FCGR2AP12318 317 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 HOXB9P17482 250 aaPredicted RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 CCNCP24863 283 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 BLKP51451 505 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 RPS6KA3P51812 740 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 HNRNPKP61978 463 aaKnown RBP eCLIP6.2□□□□□ -1.42
USP40-202ENST00000409945 DPTQ07507 201 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 TBL3Q12788 808 aaKnown RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 DPYSL3Q14195 570 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 PDK1Q15118 436 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 CYTH1Q15438 398 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 TRIP6Q15654 476 aaKnown RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 UGP2Q16851 508 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 CCDC50Q8IVM0 306 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 SYCE1Q8N0S2 351 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 PAQR4Q8N4S7 273 aaPredicted RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 WIPF2Q8TF74 440 aaPredicted RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 PDCD6IPQ8WUM4 868 aaKnown RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 LRRC45Q96CN5 670 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 PERPQ96FX8 193 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 ZNF764Q96H86 408 aaPredicted RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 RBM41Q96IZ5 413 aaKnown RBP6.2□□□□□ -1.42
USP40-202ENST00000409945 BRF2Q9HAW0 419 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 PDFQ9HBH1 243 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 ANGPTL2Q9UKU9 493 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 NENFQ9UMX5 172 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 CHD5Q8TDI0 1954 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 NUMA1Q14980 2115 aa6.2□□□□□ -1.42
USP40-202ENST00000409945 A0A1B0GTQ1 180 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CD160O95971 181 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 PAK4O96013 591 aaPredicted RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 PRLRP16471 622 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms