RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DEFB119Q8N690 84 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 OR2A1Q8NGT9 310 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 DNASE2BQ8WZ79 361 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 QRFPRQ96P65 431 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 CPNE7Q9UBL6 633 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 PNMA8BQ9ULN7 279 aaPredicted RBP17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 DOLKQ9UPQ8 538 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 ENTPD2Q9Y5L3 495 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 CEP192Q8TEP8 1941 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 TRBC2A0A5B9 178 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 ISM1B1AKI9 464 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 AHCYL1O43865 530 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 FESP07332 822 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 DDX5P17844 614 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 ATP6V1B2P21281 511 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 GRIA3P42263 894 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 HNRNPKP61978 463 aaKnown RBP eCLIP17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 TXNL4AP83876 142 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 PTGR1Q14914 329 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 TIGD2Q4W5G0 525 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 PRRT3Q5FWE3 981 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 INTS11Q5TA45 600 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 PPP4R4Q6NUP7 873 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 LMNTD1Q8N9Z9 388 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 OR4E2Q8NGC2 313 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 CHTF18Q8WVB6 975 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 LRTOMTQ8WZ04 291 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 POP5Q969H6 163 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 TESCQ96BS2 214 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 PRPF18Q99633 342 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 CLMPQ9H6B4 373 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 RMND5AQ9H871 391 aa17.45■□□□□ 0.38
CCDC88C-203ENST00000389856 H7BY64 318 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 VILLO15195 856 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 EML2O95834 649 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 FAM58BPP0C7Q3 252 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 PABPC4LP0CB38 370 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 SDC1P18827 310 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 TIA1P31483 386 aaKnown RBP eCLIP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 HPCAL1P37235 193 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 AFF3P51826 1226 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 ATXN3P54252 364 aaPredicted RBP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 TCEA2Q15560 299 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 MTX3Q5HYI7 312 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 GALNT18Q6P9A2 607 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 CYP2R1Q6VVX0 501 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 PAGE2Q7Z2X7 111 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 PAPD5Q8NDF8 572 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 FAM46DQ8NEK8 389 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 OR2L3Q8NG85 312 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 SLC13A3Q8WWT9 602 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 EDAQ92838 391 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 PRAP1Q96NZ9 151 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 KCTD14Q9BQ13 255 aaPredicted RBP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 SLC39A3Q9BRY0 314 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 MRPS26Q9BYN8 205 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 YIPF3Q9GZM5 350 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 ALG2Q9H553 416 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 ACTL8Q9H568 366 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 CUEDC1Q9NWM3 386 aaPredicted RBP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 ANKMY1Q9P2S6 941 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 WBP11Q9Y2W2 641 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 UNC80Q8N2C7 3258 aa17.44■□□□□ 0.38
CCDC88C-203ENST00000389856 ARPC2O15144 300 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 LAMTOR5O43504 91 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 PRICKLE3O43900 615 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 CLEC3AO75596 197 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 ANXA4P09525 319 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 FASP25445 335 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 PSMB5P28074 263 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 S100A3P33764 101 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 GSK3BP49841 420 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 NXPH1P58417 271 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 C21orf58P58505 322 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 UBE2IP63279 158 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 CSNK1G2P78368 415 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 MEF2AQ02078 507 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 SRSF11Q05519 484 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 ZNF542PQ5EBM4 170 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 TBCELQ5QJ74 424 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 RNF220Q5VTB9 566 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 WDR5BQ86VZ2 330 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 C1orf52Q8N6N3 182 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 TRPV3Q8NET8 790 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 ZDHHC1Q8WTX9 485 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 TEX37Q96LM6 180 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 LRRC61Q9BV99 259 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 TCEAL2Q9H3H9 227 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 IL1RL2Q9HB29 575 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 DLGAP4Q9Y2H0 992 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 GNG14A0A1W2PPG7 69 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 ASPDHA6ND91 283 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 BCAT2O15382 392 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 OR1F1O43749 312 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 PCDH7O60245 1069 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 WNT1P04628 370 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 PGRP06401 933 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 GNSP15586 552 aa17.43■□□□□ 0.38
CCDC88C-203ENST00000389856 GSTM5P46439 218 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms