RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RPLP0P05388 317 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 PROS1P07225 676 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 C8BP07358 591 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 HMOX2P30519 316 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 CCKBRP32239 447 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 GDF5P43026 501 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 ZFP36L2P47974 494 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 HTR6P50406 440 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 OR1D5P58170 312 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 UFM1P61960 85 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 CCL7P80098 99 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 ZFP36L1Q07352 338 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 FOXM1Q08050 763 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 SFT2D3Q587I9 215 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 C6orf10Q5SRN2 563 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 ARMC6Q6NXE6 501 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 TMPRSS7Q7RTY8 843 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 SFTPA2Q8IWL1 248 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 OR52E1Q8NGJ3 308 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 OR5AR1Q8NGP9 310 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 SLC45A3Q96JT2 553 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 TEX37Q96LM6 180 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 CCDC138Q96M89 665 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 STRADBQ9C0K7 418 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 RIMS3Q9UJD0 308 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 CLCA2Q9UQC9 943 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 CFAP20Q9Y6A4 193 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 PIKFYVEQ9Y2I7 2098 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 MN1Q10571 1320 aaPredicted RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 PRSS51A0A1B0GVH4 220 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 OR5K3A6NET4 321 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 EIF4E1BA6NMX2 242 aaKnown RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 D6RAR5 112 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 FXYD1O00168 92 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 NME4O00746 187 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 LSM1O15116 133 aaKnown RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 EEDO75530 441 aaKnown RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 C9P02748 559 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 ANXA5P08758 320 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 ANKRD34CP0C6C1 535 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 MYF5P13349 255 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 EPB42P16452 691 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 PIK3CGP48736 1102 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 POLR2JP52435 117 aaKnown RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 AQP4P55087 323 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 CDKL1Q00532 357 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 EMX2Q04743 252 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 KIR2DS3Q14952 304 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 ABRAXAS2Q15018 415 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 NR6A1Q15406 480 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 GRAMD1BQ3KR37 738 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 MBOAT1Q6ZNC8 495 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 KMT5CQ86Y97 462 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 Q8N9G6 341 aaPredicted RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 OR9A1PQ8NGU1 263 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 ATL1Q8WXF7 558 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 LRRC58Q96CX6 371 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 COPS7BQ9H9Q2 264 aaPredicted RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 HRASLS2Q9NWW9 162 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 ARL15Q9NXU5 204 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 AKAP7Q9P0M2 348 aaPredicted RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 SEMA5BQ9P283 1151 aa9.79□□□□□ -0.84
VPS53-202ENST00000389040 ARID1BQ8NFD5 2236 aaPredicted RBP9.79□□□□□ -0.84
VPS53-202ENST00000389040 FAM234BA2RU67 622 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 ASPDHA6ND91 283 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 CCDC154A6NI56 674 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 C2orf74A8MZ97 194 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 STK16O75716 305 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 STAMBPO95630 424 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 MT-CO3P00414 261 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 EBLN1P0CF75 366 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 ERGP11308 486 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 SLC6A2P23975 617 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 HNMTP50135 292 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 RHDQ02161 417 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 CAPRIN1Q14444 709 aaKnown RBP9.78□□□□□ -0.84
VPS53-202ENST00000389040 CYP2A13Q16696 494 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 SPATS1Q496A3 300 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 DHRS13Q6UX07 377 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 RNF165Q6ZSG1 346 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 UBE2R2Q712K3 238 aaPredicted RBP9.78□□□□□ -0.84
VPS53-202ENST00000389040 DHFR2Q86XF0 187 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 LILRA2Q8N149 483 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 TCAIMQ8N3R3 496 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 OR4E2Q8NGC2 313 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 OR2L8Q8NGY9 312 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 NCSTNQ92542 709 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 VPS33AQ96AX1 596 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 NR1H4Q96RI1 486 aaPredicted RBP9.78□□□□□ -0.84
VPS53-202ENST00000389040 HBEGFQ99075 208 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 MENTQ9BUN1 341 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 NTMT1Q9BV86 223 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 B3GNT4Q9C0J1 378 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 CHRNA10Q9GZZ6 450 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 PCBD2Q9H0N5 130 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 TRPS1Q9UHF7 1281 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 LEF1Q9UJU2 399 aaPredicted RBP9.78□□□□□ -0.84
VPS53-202ENST00000389040 PDE10AQ9Y233 779 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 DTNAQ9Y4J8 743 aa9.78□□□□□ -0.84
VPS53-202ENST00000389040 CEP250Q9BV73 2442 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms