RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 POU4F1Q01851 419 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 TSNQ15631 228 aaKnown RBP20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 MFSD4BQ5TF39 518 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 LANCL3Q6ZV70 420 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 CPEB2Q7Z5Q1 589 aaKnown RBP20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 ADAMTSL2Q86TH1 951 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 C17orf53Q8N3J3 647 aaPredicted RBP20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 SIRT6Q8N6T7 355 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 PRR7Q8TB68 274 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 NT5CQ8TCD5 201 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 CDKL2Q92772 493 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 EGFL8Q99944 293 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 LRRC4CQ9HCJ2 640 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 CTNNAL1Q9UBT7 734 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 MTO1Q9Y2Z2 717 aaKnown RBP20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 KCNE2Q9Y6J6 123 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 TCRBV9S1A1TA0A576 114 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 ANKUB1A6NFN9 424 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 GALR3O60755 368 aaPredicted RBP20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 ITGAMP11215 1152 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 ALOX12P18054 663 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 HNMTP50135 292 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 ARG2P78540 354 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 RGS1Q08116 209 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 CDC16Q13042 620 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 NXPE4Q6UWF7 544 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 AMER2Q8N7J2 671 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 SSC4DQ8WTU2 575 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 HAS2Q92819 552 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 OR1F2PQ96R84 312 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 DERL2Q9GZP9 239 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 PLA2G3Q9NZ20 509 aa20.48■□□□□ 0.87
CCDC28B-201ENST00000373602 IGHV3-20A0A0C4DH32 117 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 DYTNA2CJ06 578 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 OR2W5A6NFC9 320 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 ZNF860A6NHJ4 632 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 SEC24DO94855 1032 aaPredicted RBP20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 SERPIND1P05546 499 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 AGTR2P50052 363 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 SLC12A2P55011 1212 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 NIPAL1Q6NVV3 410 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 RPUSD3Q6P087 351 aaKnown RBP20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 ANKRD37Q7Z713 158 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 TMPRSS11BQ86T26 416 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 KLHDC8AQ8IYD2 350 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 PLPP5Q8NEB5 264 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 OR5T3Q8NGG3 340 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 GRHL3Q8TE85 626 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 PEX11GQ96HA9 241 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 CPNE1Q99829 537 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 AIF1LQ9BQI0 150 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 PHACTR1Q9C0D0 580 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 LANCL2Q9NS86 450 aa20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 UTP11Q9Y3A2 253 aaKnown RBP20.47■□□□□ 0.87
CCDC28B-201ENST00000373602 CTAGE15A4D2H0 777 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 FAM159BA6NKW6 160 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 C1QAP02745 245 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 GSTA2P09210 222 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 SLC6A12P48065 614 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 TNFSF10P50591 281 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 GPX6P59796 221 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 SKP1P63208 163 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 RHAGQ02094 409 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 DEFB134Q4QY38 66 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 PLAG1Q6DJT9 500 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 SYT10Q6XYQ8 523 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 C3orf62Q6ZUJ4 267 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 FRA10AC1Q70Z53 315 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 CTAGE6Q86UF2 777 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 ANKRD53Q8N9V6 530 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 ST6GALNAC3Q8NDV1 305 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 OR1N1Q8NGS0 311 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 RHBDF1Q96CC6 855 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 TSPAN17Q96FV3 270 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 GPR22Q99680 433 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 RBBP8Q99708 897 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 RNF32Q9H0A6 362 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 CAB39LQ9H9S4 337 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 TXNDC16Q9P2K2 825 aa20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 USP9YO00507 2555 aaPredicted RBP20.46■□□□□ 0.87
CCDC28B-201ENST00000373602 COL12A1Q99715 3063 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 TRAV17A0A0B4J275 112 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 DNAJB6O75190 326 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 UQCRHP07919 91 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 ZNF888P0CJ79 500 aaPredicted RBP20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 GP5P40197 560 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 PLTPP55058 493 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 CAV1Q03135 178 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 ELOAQ14241 798 aaKnown RBP20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 USP10Q14694 798 aaKnown RBP20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 TGFBIQ15582 683 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 C18orf21Q32NC0 220 aaPredicted RBP20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 ABHD13Q7L211 337 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 ZNF572Q7Z3I7 529 aaPredicted RBP20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 TRPV3Q8NET8 790 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 UTP15Q8TED0 518 aaKnown RBP20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 FAR1Q8WVX9 515 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 RBCK1Q9BYM8 510 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 UNKQ9C0B0 810 aaKnown RBP20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 SLC6A16Q9GZN6 736 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms