RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PIPSLA2A3N6 862 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 SUV39H1O43463 412 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 TGFB1P01137 390 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 FGBP02675 491 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF8P17098 575 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-202ENST00000352886 NR4A1P22736 598 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 EPHA2P29317 976 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 GPR1P46091 355 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 CASP9P55211 416 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 GP2P55259 537 aaKnown RBP20.94■□□□□ 0.94
SHMT1-202ENST00000352886 KCNJ10P78508 379 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 MEF2AQ02078 507 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-202ENST00000352886 IQCCQ4KMZ1 466 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 ARMCX6Q7L4S7 300 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 COMMD6Q7Z4G1 85 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 FNDC8Q8TC99 324 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 C7orf34Q96L11 122 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 ADPRHL2Q9NX46 363 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 MRPS23Q9Y3D9 190 aaKnown RBP20.94■□□□□ 0.94
SHMT1-202ENST00000352886 C5orf42Q9H799 3197 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 PRRT4C9JH25 899 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 C1GALT1C1LP0DN25 315 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 HBA1P69905 142 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 EMX1Q04741 257 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-202ENST00000352886 ANKDD1AQ495B1 522 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 LAIR1Q6GTX8 287 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 OR9A1PQ8NGU1 263 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 ARRDC3Q96B67 414 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 APOL4Q9BPW4 351 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 EFCAB11Q9BUY7 163 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 SGPP1Q9BX95 441 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 BHLHE41Q9C0J9 482 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-202ENST00000352886 REEP4Q9H6H4 257 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 DMRT3Q9NQL9 472 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 SIRT5Q9NXA8 310 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 GMEB1Q9Y692 573 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 HSPE1-MOB4S4R3N1 261 aa20.94■□□□□ 0.94
SHMT1-202ENST00000352886 SH3PXD2BA1X283 911 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 HNRNPA1P09651 372 aaKnown RBP eCLIP20.93■□□□□ 0.94
SHMT1-202ENST00000352886 PCGF2P35227 344 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 CRATP43155 626 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF829Q3KNS6 432 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-202ENST00000352886 PAGE2BQ5JRK9 111 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 CRTC3Q6UUV7 619 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF852Q6ZMS4 543 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 SLC16A12Q6ZSM3 486 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 CELF5Q8N6W0 485 aaKnown RBP20.93■□□□□ 0.94
SHMT1-202ENST00000352886 C11orf65Q8NCR3 313 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 CXorf40BQ96DE9 158 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 WDR34Q96EX3 536 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 OR51B5Q9H339 312 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 ERVK-18Q9QC07 812 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 ATP6V1HQ9UI12 483 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 NDRG4Q9ULP0 352 aaKnown RBP20.93■□□□□ 0.94
SHMT1-202ENST00000352886 FOXE1O00358 373 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-202ENST00000352886 MMP20O60882 483 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 PFDN1O60925 122 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 ADH1CP00326 375 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 INHBBP09529 407 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 C6P13671 934 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 FSHRP23945 695 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 ITGB7P26010 798 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 MC1RQ01726 317 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 TAP2Q03519 686 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 FNDC3BQ53EP0 1204 aaKnown RBP20.93■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF547Q8IVP9 402 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 LAS2Q8IYD9 372 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.93■□□□□ 0.94
SHMT1-202ENST00000352886 RSPRY1Q96DX4 576 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 SPNS1Q9H2V7 528 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 GPATCH2Q9NW75 528 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 SLC27A6Q9Y2P4 619 aa20.93■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF99A8MXY4 864 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-202ENST00000352886 HOXC11O43248 304 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-202ENST00000352886 MAN1A2O60476 641 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 NDUFS2O75306 463 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 GCM2O75603 506 aaPredicted RBP20.92■□□□□ 0.94
SHMT1-202ENST00000352886 C9P02748 559 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 LRRC74AQ0VAA2 488 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 TEAD4Q15561 434 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 COX20Q5RI15 118 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 SPRED2Q7Z698 418 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 MIPOL1Q8TD10 442 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 FAR1Q8WVX9 515 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 BORCS5Q969J3 196 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 DOHHQ9BU89 302 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 RUBCNLQ9H714 662 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 TPRKBQ9Y3C4 175 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 PCDHGB1Q9Y5G3 927 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 TMEM229AB2RXF0 380 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 DNAJB5O75953 348 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 C6orf47O95873 294 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 ETFAP13804 333 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 JUNDP17535 347 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 VIPR2P41587 438 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 MVDP53602 400 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 SLC35A2P78381 396 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 ELP6Q0PNE2 266 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 AQP6Q13520 282 aa20.92■□□□□ 0.94
SHMT1-202ENST00000352886 NFE2L1Q14494 772 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms