RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 MAMLD1Q13495 774 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 DSG2Q14126 1118 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HAGHQ16775 308 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 TMEM107Q6UX40 140 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 DNAJB7Q7Z6W7 309 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ATCAYQ86WG3 371 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 TMC8Q8IU68 726 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 FTMTQ8N4E7 242 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OR8D4Q8NGM9 314 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.02□□□□□ -1.779e-9■■■■■ 41.5
NEDD4-201ENST00000338963 FBLIM1Q8WUP2 373 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ACOT11Q8WXI4 607 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CENPIQ92674 756 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SLCO4A1Q96BD0 722 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ADPGKQ9BRR6 497 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OR51J1Q9H342 316 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ESRP2Q9H6T0 727 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NMRAL1Q9HBL8 299 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PRM3Q9NNZ6 103 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MED17Q9NVC6 651 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 TEX13CA0A0J9YWL9 993 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CARNS1A5YM72 827 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 WTIPA6NIX2 430 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 A8MXE2 369 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NPIPA2E9PIF3 369 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NPIPB9F8W1W9 429 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CASKO14936 926 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ANKRD28O15084 1053 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 GPR37O15354 613 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HCRTR2O43614 444 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 VEGFDO43915 354 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HIST1H2AGP0C0S8 130 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HIST1H2ADP20671 130 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 AGTR1P30556 359 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 KIR3DL2P43630 455 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HCCSP53701 268 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 RAP2BP61225 183 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ISL1P61371 349 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SRSF11Q05519 484 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 FUT2Q10981 343 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SPP2Q13103 211 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PCLAFQ15004 111 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 FSCN1Q16658 493 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MAJINQ3KP22 176 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HIST2H2AA3Q6FI13 130 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 AADACL2Q6P093 401 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MOXD1Q6UVY6 613 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NLRP8Q86W28 1048 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ABI1Q8IZP0 508 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MS4A15Q8N5U1 240 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 BEND2Q8NDZ0 799 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 THAP6Q8TBB0 222 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF669Q96BR6 464 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HIST1H2AHQ96KK5 128 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SEPT5Q99719 369 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HIST1H2AJQ99878 128 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MRPL4Q9BYD3 311 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 RBCK1Q9BYM8 510 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OR51E2Q9H255 320 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PARD6AQ9NPB6 346 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 HEBP1Q9NRV9 189 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 BARHL2Q9NY43 387 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SPATA31D1Q6ZQQ2 1576 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 C9orf170A2RU37 121 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 FAM234BA2RU67 622 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 C7orf66A4D0T2 115 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 REM1O75628 298 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MATN4O95460 622 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF888P0CJ79 500 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 BMP3P12645 472 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 FGF7P21781 194 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CDC42P60953 191 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NUTF2P61970 127 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 VLDLRP98155 873 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SP2Q02086 613 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CDK5R2Q13319 367 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SAXO2Q658L1 398 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ESRP1Q6NXG1 681 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 INTS5Q6P9B9 1019 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PHF13Q86YI8 300 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 C7orf61Q8IZ16 206 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OR4F6Q8NGB9 312 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 WDR20Q8TBZ3 569 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CREB3L4Q8TEY5 395 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OSTF1Q92882 214 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MRPL57Q9BQC6 102 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 TEX12Q9BXU0 123 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PRRG3Q9BZD7 231 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SIK2Q9H0K1 926 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF700Q9H0M5 742 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SLCO3A1Q9UIG8 710 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 DNPEPQ9ULA0 475 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF490Q9ULM2 529 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 TBX20Q9UMR3 447 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CLCA2Q9UQC9 943 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PCDHA2Q9Y5H9 948 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MROH1Q8NDA8 1641 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SOWAHBA6NEL2 793 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 LSM8O95777 96 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 S1PR4O95977 384 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms