RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 NCF1CA8MVU1 366 aaPredicted RBP13.64□□□□□ -0.23
HMGN3-201ENST00000275036 NDUFS4O43181 175 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 DNAJB6O75190 326 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 SEMA7AO75326 666 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 RDH16O75452 317 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 HPP00738 406 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 HEXBP07686 556 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 CELA2AP08217 269 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 SLC35G6P0C7Q6 338 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 NCF1P14598 390 aaPredicted RBP13.64□□□□□ -0.23
HMGN3-201ENST00000275036 STMN1P16949 149 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 VARSP26640 1264 aaKnown RBP13.64□□□□□ -0.23
HMGN3-201ENST00000275036 KCNC1P48547 511 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 RAB10P61026 200 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 ILF2Q12905 390 aaKnown RBP13.64□□□□□ -0.23
HMGN3-201ENST00000275036 DLG1Q12959 904 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 FBXO48Q5FWF7 155 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 GRTP1Q5TC63 336 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 TMEM205Q6UW68 189 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 NXPE4Q6UWF7 544 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 NDUFAF7Q7L592 441 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 CMC1Q7Z7K0 106 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 TMPRSS11BQ86T26 416 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 MMGT1Q8N4V1 131 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 AFAP1L2Q8N4X5 818 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 CISD2Q8N5K1 135 aaKnown RBP13.64□□□□□ -0.23
HMGN3-201ENST00000275036 OR51Q1Q8NH59 317 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 ZNF592Q92610 1267 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 THOC3Q96J01 351 aaKnown RBP13.64□□□□□ -0.23
HMGN3-201ENST00000275036 UBXN10Q96LJ8 280 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 PSMG3-AS1Q96PY0 264 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 FAM129AQ9BZQ8 928 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 VN1R1Q9GZP7 353 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 AICDAQ9GZX7 198 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 LHPPQ9H008 270 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 PELI2Q9HAT8 420 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 ANKHQ9HCJ1 492 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 ZFP69BQ9UJL9 534 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 NAALAD2Q9Y3Q0 740 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 DYRK1BQ9Y463 629 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 SLC22A7Q9Y694 548 aa13.64□□□□□ -0.23
HMGN3-201ENST00000275036 SPTAN1Q13813 2472 aaKnown RBP13.64□□□□□ -0.23
HMGN3-201ENST00000275036 LOC102723996A0A087X1L8 192 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 BLACEA4D250 179 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 C4orf51C9J302 202 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 KLHL18O94889 574 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 WDR47O94967 919 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 SLC35E2BP0CK96 405 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 STX2P32856 288 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 SPRP35270 261 aaPredicted RBP13.63□□□□□ -0.23
HMGN3-201ENST00000275036 XCR1P46094 333 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 HNMTP50135 292 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 HYAL2Q12891 473 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 PWP1Q13610 501 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 PCOLCEQ15113 449 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 LANCL3Q6ZV70 420 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 IQCKQ8N0W5 287 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 ZADH2Q8N4Q0 377 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 OR5T3Q8NGG3 340 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 NT5CQ8TCD5 201 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 PSMF1Q92530 271 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 ESAMQ96AP7 390 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 BARD1Q99728 777 aaKnown RBP13.63□□□□□ -0.23
HMGN3-201ENST00000275036 WDR77Q9BQA1 342 aaPredicted RBP13.63□□□□□ -0.23
HMGN3-201ENST00000275036 ILKAPQ9H0C8 392 aaPredicted RBP13.63□□□□□ -0.23
HMGN3-201ENST00000275036 MAP10Q9P2G4 905 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 KCNE2Q9Y6J6 123 aa13.63□□□□□ -0.23
HMGN3-201ENST00000275036 NSG1A0A0A6YYJ2 146 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 HMX2A2RU54 273 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 KLHL41O60662 606 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 GALR3O60755 368 aaPredicted RBP13.62□□□□□ -0.23
HMGN3-201ENST00000275036 PRAMEF4O60810 478 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 IPO13O94829 963 aaKnown RBP13.62□□□□□ -0.23
HMGN3-201ENST00000275036 SERPIND1P05546 499 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 PRR35P0CG20 571 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 ZNF888P0CJ79 500 aaPredicted RBP13.62□□□□□ -0.23
HMGN3-201ENST00000275036 CXCR2P25025 360 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 SOX11P35716 441 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 AHRP35869 848 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 GGT5P36269 586 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 ATP6V0D1P61421 351 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 OLR1P78380 273 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 SLMAPQ14BN4 828 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 NR6A1Q15406 480 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 EIF2S3LQ2VIR3 472 aaKnown RBP13.62□□□□□ -0.23
HMGN3-201ENST00000275036 MINDY4Q4G0A6 757 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 DEFB134Q4QY38 66 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 AGAP7PQ5VUJ5 663 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 PRAMEF9Q5VWM5 478 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 SLCO4C1Q6ZQN7 724 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 GPSM1Q86YR5 675 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 CREB3L4Q8TEY5 395 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 PPP4R1Q8TF05 950 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 VPS50Q96JG6 964 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 AGAP4Q96P64 663 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 CYTH2Q99418 400 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 AIF1LQ9BQI0 150 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 RBCK1Q9BYM8 510 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 SLC6A16Q9GZN6 736 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 ZNF700Q9H0M5 742 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms