RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 METTL2AQ96IZ6 378 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SLC35G5Q96KT7 338 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 GABRG3Q99928 467 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SLC35A5Q9BS91 424 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 NEUROD4Q9HD90 331 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 KRCC1Q9NPI7 259 aaPredicted RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 TM7SF3Q9NS93 570 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 CHCHD3Q9NX63 227 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 RPS6KB2Q9UBS0 482 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 UBFD1O14562 309 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 TAPBPO15533 448 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 T-ENOLP0DO92 83 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 GABRG2P18507 467 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 FCARP24071 287 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 CCR5P51681 352 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 MTTPP55157 894 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 CTC1Q2NKJ3 1217 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 KHDRBS2Q5VWX1 349 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 Q7L0L9 218 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 COMMD6Q7Z4G1 85 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 ACPTQ9BZG2 426 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 KCNH6Q9H252 994 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 LYARQ9NX58 379 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 CPNE7Q9UBL6 633 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SERGEFQ9UGK8 458 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 UTS2RQ9UKP6 389 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 WBP11Q9Y2W2 641 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 RTCAO00442 366 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 CLOCKO15516 846 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SBK3P0C264 359 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 LINC00271P0C7V0 271 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 CD27P26842 260 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 ALDH6A1Q02252 535 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 PRDX1Q06830 199 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SLC13A2Q13183 592 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 NRF1Q16656 503 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SPATS1Q496A3 300 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 HACD2Q6Y1H2 254 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 CYHR1Q6ZMK1 362 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SYT13Q7L8C5 426 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SPEM1Q8N4L4 309 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 Q8N9G6 341 aaPredicted RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 L3MBTL4Q8NA19 623 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 OR4K1Q8NGD4 311 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 OR56A3Q8NH54 315 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SLC9A6Q92581 669 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 TMEM74Q96NL1 305 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 PITHD1Q9GZP4 211 aaPredicted RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 TPT1P8Q9HAU6 139 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 POT1Q9NUX5 634 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 TAAR2Q9P1P5 351 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 WARS2Q9UGM6 360 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 EEDO75530 441 aaKnown RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 PROS1P07225 676 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 POU1F1P28069 291 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 DRD3P35462 400 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ATP6V1E1P36543 226 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ANKRD26P1Q6NSI1 321 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ZNF786Q8N393 782 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 WDR60Q8WVS4 1066 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 PDXPQ96GD0 296 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 DMRT3Q9NQL9 472 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 SCN3BQ9NY72 215 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 SEC14L3Q9UDX4 400 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ENOPH1Q9UHY7 261 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 MAGEA13PA6NCF6 341 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 GRXCR2A6NFK2 248 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 CAPN14A8MX76 684 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 K7EQS6 105 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 IL3P08700 152 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 NR2F6P10588 404 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 SH3BGRP55822 239 aaPredicted RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 MESP2Q0VG99 397 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 CCSMST1Q4G0I0 132 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 PYCR3Q53H96 274 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ZNF761Q86XN6 746 aaPredicted RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 OXR1Q8N573 874 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ADCY4Q8NFM4 1077 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 DPYSL5Q9BPU6 564 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 C1QTNF3Q9BXJ4 246 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 S1PR5Q9H228 398 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ACTR10Q9NZ32 417 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 WNT16Q9UBV4 365 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 SAMHD1Q9Y3Z3 626 aaKnown RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 ANKRD12Q6UB98 2062 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 A0A096LPI6 279 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 NRG2O14511 850 aaPredicted RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 DUX1O43812 170 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 VSX2P58304 361 aaPredicted RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 SMIM11AP58511 58 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 RACK1P63244 317 aaKnown RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 EPS8Q12929 822 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 SPRED3Q2MJR0 410 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 NANOGP8Q6NSW7 305 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 TNFAIP8L2Q6P589 184 aaPredicted RBP11.13□□□□□ -0.63
VPS4A-201ENST00000254950 TRIM69Q86WT6 500 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 CAMKK1Q8N5S9 505 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 OR7A2PQ8NGA2 310 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 OR2L8Q8NGY9 312 aa11.13□□□□□ -0.63
VPS4A-201ENST00000254950 MAGEE2Q8TD90 523 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms