RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 F8VWA3 439 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CLDN4O14493 209 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 TRAFD1O14545 582 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 SURF4O15260 269 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 HDAC3O15379 428 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SIGLEC5O15389 551 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MLNRO43193 412 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 AP5Z1O43299 807 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZNF749O43361 778 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SNX3O60493 162 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 TSPAN1O60635 241 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 GALR3O60755 368 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 TSC22D2O75157 780 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZNF253O75346 499 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SAP30O75446 220 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 FRAT2O75474 233 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 TSPAN9O75954 239 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 BEST1O76090 585 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 RECQL5O94762 991 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 OR6B1O95007 311 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 HPRP00739 348 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 IGHG1P01857 330 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ABCB1P08183 1280 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 ALOX5P09917 674 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SAGP10523 405 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 PCP11498 1178 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 F3P13726 295 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 IRF2P14316 349 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 AKR1B1P15121 316 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 PFKFB1P16118 471 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 GJA1P17302 382 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 C4BPBP20851 252 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CPT2P23786 658 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 LMO2P25791 158 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ELAVL4P26378 380 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 ALDH1B1P30837 517 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CSTF2P33240 577 aaKnown RBP eCLIP0.32□□□□□ -2.36
VPS35-212ENST00000640313 NNMTP40261 264 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 TNFRSF4P43489 277 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 TSFMP43897 325 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 OR3A1P47881 315 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ASCL1P50553 236 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 DNA2P51530 1060 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NAP1L1P55209 391 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 NDUFV3P56181 108 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 CLDN17P56750 224 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ABCE1P61221 599 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 FKBP3Q00688 224 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 TLE4Q04727 773 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 TRAP1Q12931 704 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 PRKG2Q13237 762 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZNF177Q13360 481 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 SNTB1Q13884 538 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 VEZF1Q14119 521 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 KIAA0141Q14154 515 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 PTPRCAPQ14761 206 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZNF146Q15072 292 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NONOQ15233 471 aaKnown RBP eCLIP0.32□□□□□ -2.36
VPS35-212ENST00000640313 PTPN14Q15678 1187 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MLF2Q15773 248 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 FAM189A2Q15884 450 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 KYNUQ16719 465 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 UPP1Q16831 310 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MTHFSDQ2M296 383 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 C17orf58Q2M2W7 97 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 POM121L1PQ3SYA9 428 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CRY2Q49AN0 593 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 FAM106AQ4KMX7 169 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 LACTB2Q53H82 288 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 IGSF11Q5DX21 431 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 HERC4Q5GLZ8 1057 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 SPANXN4Q5MJ08 99 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 LCN1P1Q5VSP4 162 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 LYSMD4Q5XG99 296 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ITPRIPL1Q6GPH6 555 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 KLHL10Q6JEL2 608 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NAA16Q6N069 864 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 RPUSD3Q6P087 351 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 NOTUMQ6P988 496 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 REG3GQ6UW15 175 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 BTNL8Q6UX41 500 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZNF841Q6ZN19 808 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 C4orf50Q6ZRC1 276 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 FCRLAQ7L513 359 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ENOSF1Q7L5Y1 443 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 TIPARPQ7Z3E1 657 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 KRT77Q7Z794 578 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ABI3BPQ7Z7G0 1075 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZER1Q7Z7L7 766 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 PRPF39Q86UA1 669 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 TLK2Q86UE8 772 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SLC25A42Q86VD7 318 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CERS3Q8IU89 383 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CCDC60Q8IWA6 550 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 RCOR2Q8IZ40 523 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SLC22A15Q8IZD6 547 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 APCDD1Q8J025 514 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 LGI2Q8N0V4 545 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NDUFAF2Q8N183 169 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 METTL4Q8N3J2 472 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms