RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 CCDC151A5D8V7 595 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 CLGNO14967 610 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 SRPX2O60687 465 aaPredicted RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 RECKO95980 971 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 STATHP02808 62 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 KLK3P07288 261 aaPredicted RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 MTHFD2P13995 350 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 GNAZP19086 355 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 GGT5P36269 586 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 ALDH18A1P54886 795 aaKnown RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 RPS18P62269 152 aaKnown RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 GPS2Q13227 327 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 SETDB1Q15047 1291 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 KRT71Q3SY84 523 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 WASHC2DQ5SRD0 308 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 C1orf189Q5VU69 101 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 FBXO42Q6P3S6 717 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 FAM199XQ6PEV8 388 aaPredicted RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 LCA5Q86VQ0 697 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 APLFQ8IW19 511 aaPredicted RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 OR4N4Q8N0Y3 316 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 PTGR2Q8N8N7 351 aaPredicted RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 ABHD11Q8NFV4 315 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 PHF21BQ96EK2 531 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 AIF1LQ9BQI0 150 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 CD244Q9BZW8 370 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 ROPN1BQ9BZX4 212 aaPredicted RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 ROPN1Q9HAT0 212 aaPredicted RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 PELI2Q9HAT8 420 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 DHCR7Q9UBM7 475 aaKnown RBP16.98■□□□□ 0.31
CLN3-247ENST00000636351 TMCO1Q9UM00 188 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 K7EPI3 171 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 MAP2K7O14733 419 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 GLRA3O75311 464 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 GSTA1P08263 222 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 ALAS2P22557 587 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 BCL6P41182 706 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 REEP5Q00765 189 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 NXPE4Q6UWF7 544 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 CAPS2Q9BXY5 557 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 NLNQ9BYT8 704 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 CUTCQ9NTM9 273 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 GPRC5BQ9NZH0 403 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 ASB1Q9Y576 335 aa16.97■□□□□ 0.31
CLN3-247ENST00000636351 NBPF19A0A087WUL8 3843 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 TRBC2A0A5B9 178 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 TTLL8A6PVC2 850 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 H3BMH7 237 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 MEN1O00255 615 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 COPEO14579 308 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 OR1F1O43749 312 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 SERPIND1P05546 499 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 KRT4P19013 534 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 TAC1P20366 129 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 VARSP26640 1264 aaKnown RBP16.96■□□□□ 0.31
CLN3-247ENST00000636351 UQCRFS1P47985 274 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 ARSFP54793 590 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 RELAQ04206 551 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 SLBPQ14493 270 aaKnown RBP eCLIP16.96■□□□□ 0.31
CLN3-247ENST00000636351 RBBP5Q15291 538 aaKnown RBP16.96■□□□□ 0.31
CLN3-247ENST00000636351 UGT8Q16880 541 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 CPZQ66K79 652 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 RHBDD2Q6NTF9 364 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 TTLL10Q6ZVT0 673 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 DSELQ8IZU8 1212 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 C4orf33Q8N1A6 199 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 TEX9Q8N6V9 391 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 SLC38A9Q8NBW4 561 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 PROKR1Q8TCW9 393 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 THAP11Q96EK4 314 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 ZNF285Q96NJ3 590 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 OR2A5Q96R48 311 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 TMEM216Q9P0N5 145 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 LGALS13Q9UHV8 139 aa16.96■□□□□ 0.31
CLN3-247ENST00000636351 TNPO3Q9Y5L0 923 aaKnown RBP16.96■□□□□ 0.31
CLN3-247ENST00000636351 MDC1Q14676 2089 aaKnown RBP16.96■□□□□ 0.31
CLN3-247ENST00000636351 UTP20O75691 2785 aaKnown RBP16.96■□□□□ 0.31
CLN3-247ENST00000636351 HYKKA2RU49 373 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 LRRC14BA6NHZ5 514 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 C9J4A7 227 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 TXNDC9O14530 226 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 P2RX6O15547 441 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 KLK8O60259 260 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 VPS4BO75351 444 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 H2AFYO75367 372 aaKnown RBP16.95■□□□□ 0.3
CLN3-247ENST00000636351 C1GALT1C1LP0DN25 315 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 EPB42P16452 691 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 AGXTP21549 392 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 PTPN4P29074 926 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 EEF1DP29692 281 aaKnown RBP16.95■□□□□ 0.3
CLN3-247ENST00000636351 RORAP35398 523 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 ARL1P40616 181 aaPredicted RBP16.95■□□□□ 0.3
CLN3-247ENST00000636351 RPS15P62841 145 aaKnown RBP16.95■□□□□ 0.3
CLN3-247ENST00000636351 ZNF844Q08AG5 666 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 CHAF1BQ13112 559 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 IL10RAQ13651 578 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 HKDC1Q2TB90 917 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 FAM214AQ32MH5 1076 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 XKR6Q5GH73 641 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 YOD1Q5VVQ6 348 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms