RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PIK3R3Q92569 461 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 SCAMP4Q969E2 229 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 IGSF8Q969P0 613 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 TMEM109Q9BVC6 243 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 RGPD8O14715 1765 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 FAM159BA6NKW6 160 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 SLC22A2O15244 555 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 SEMA4FO95754 770 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 C6orf47O95873 294 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 EBLN1P0CF75 366 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 CTSAP10619 480 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 RPS15P62841 145 aaKnown RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 ADGRE1Q14246 886 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 IDNKQ5T6J7 187 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 BICRALQ6AI39 1079 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 YIPF7Q8N8F6 280 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 ZSCAN4Q8NAM6 433 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 THAP3Q8WTV1 239 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 MAGEE1Q9HCI5 957 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 GRHPRQ9UBQ7 328 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 B4GALT7Q9UBV7 327 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 RAB26Q9ULW5 256 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 BLOC1S5-TXNDC5H3BN57 136 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 STC2O76061 302 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 HMGN1P05114 100 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 C5AR1P21730 350 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 ACRV1P26436 265 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 ABCA11PQ4W5N1 156 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 LINGO2Q7L985 606 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 GPRIN1Q7Z2K8 1008 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 IQCKQ8N0W5 287 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 PEBP4Q96S96 227 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 PKP4Q99569 1192 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 CHID1Q9BWS9 393 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 DEFB126Q9BYW3 111 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 ZFR2Q9UPR6 939 aaKnown RBP11.02□□□□□ -0.64
CLIP1-219ENST00000620786 GRIP1Q9Y3R0 1128 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 A0A1W2PPL8 197 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 ITM2AO43736 263 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 RPP14O95059 124 aaKnown RBP11.02□□□□□ -0.64
CLIP1-219ENST00000620786 H1F0P07305 194 aaKnown RBP11.02□□□□□ -0.64
CLIP1-219ENST00000620786 MTTPP55157 894 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 OR4D2P58180 307 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 GMFBP60983 142 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 RING1Q06587 406 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 ELAVL3Q14576 367 aaKnown RBP11.02□□□□□ -0.64
CLIP1-219ENST00000620786 CRTC2Q53ET0 693 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-219ENST00000620786 OR4K14Q8NGD5 310 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 KCNC2Q96PR1 638 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 ORAI3Q9BRQ5 295 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 SLC2A11Q9BYW1 496 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-219ENST00000620786 STYXL1Q9Y6J8 313 aa11.02□□□□□ -0.64
CLIP1-219ENST00000620786 A0A1W2PRG6 482 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 FAM170BA6NMN3 283 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 NPC1O15118 1278 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 BEST1O76090 585 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 DHFRP00374 187 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 SELENOVP59797 346 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 SWI5Q1ZZU3 235 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 C5orf22Q49AR2 442 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 ANKRD26P1Q6NSI1 321 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 TAS1R3Q7RTX0 852 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 ZDHHC1Q8WTX9 485 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 MVB12BQ9H7P6 319 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 TRIM64A6NGJ6 449 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 H3BQ06 376 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-219ENST00000620786 INMTO95050 263 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 RCBTB2O95199 551 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 PFKLP17858 780 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 CBLP22681 906 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 BMP8BP34820 402 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 HNRNPKP61978 463 aaKnown RBP eCLIP11.02□□□□□ -0.651e-6■■■■□ 23.8
CLIP1-219ENST00000620786 POU6F2P78424 691 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-219ENST00000620786 DCAF12L1Q5VU92 463 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 PGBD2Q6P3X8 592 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 BMP8AQ7Z5Y6 402 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 TICAM1Q8IUC6 712 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 WDR12Q9GZL7 423 aaKnown RBP11.02□□□□□ -0.65
CLIP1-219ENST00000620786 LMAN1LQ9HAT1 526 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 ZIM2Q9NZV7 527 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 UPB1Q9UBR1 384 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 PRODH2Q9UF12 536 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 RPL36Q9Y3U8 105 aaKnown RBP11.02□□□□□ -0.65
CLIP1-219ENST00000620786 ZNF670-ZNF695F2Z2N8 137 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 MID1O15344 667 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 CAPN5O15484 640 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-219ENST00000620786 RNF13O43567 381 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 ZNF623O75123 536 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 ZNF432O94892 652 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 RAB28P51157 221 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 DGKQP52824 942 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 CBX3Q13185 183 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 EIF4HQ15056 248 aaKnown RBP11.02□□□□□ -0.65
CLIP1-219ENST00000620786 IQCCQ4KMZ1 466 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 C1orf189Q5VU69 101 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 FAM43BQ6ZT52 329 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-219ENST00000620786 USP53Q70EK8 1073 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 GPAT4Q86UL3 456 aa11.02□□□□□ -0.65
CLIP1-219ENST00000620786 ARMC10Q8N2F6 343 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms