RNA–Protein interactions for RNA: ENST00000614526.1

LIG4-205, Transcript of DNA ligase 4, humanhuman

TSL 2 BASIC

Gene LIG4, Length 3,884 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-205ENST00000614526 METTL2BQ6P1Q9 378 aaKnown RBP3.3□□□□□ -1.88
LIG4-205ENST00000614526 PRMT9Q6P2P2 845 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 TMEM154Q6P9G4 183 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 UNC5DQ6UXZ4 953 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 ZBTB49Q6ZSB9 765 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 PDSS2Q86YH6 399 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 HS3ST5Q8IZT8 346 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 TMEM102Q8N9M5 508 aaPredicted RBP3.3□□□□□ -1.88
LIG4-205ENST00000614526 NETO1Q8TDF5 533 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 LCN9Q8WX39 176 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 CXorf40BQ96DE9 158 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 OTUB1Q96FW1 271 aaPredicted RBP3.3□□□□□ -1.88
LIG4-205ENST00000614526 OR2M4Q96R27 311 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 C17orf62Q9BQA9 187 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 DPH7Q9BTV6 452 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 DUSP26Q9BV47 211 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 CHID1Q9BWS9 393 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 PHF7Q9BWX1 381 aaPredicted RBP3.3□□□□□ -1.88
LIG4-205ENST00000614526 C1QTNF7Q9BXJ2 289 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 PAIP1Q9H074 479 aaKnown RBP3.3□□□□□ -1.88
LIG4-205ENST00000614526 KLHL31Q9H511 634 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 SYNPO2LQ9H987 977 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 ACTR3BQ9P1U1 418 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 KLF15Q9UIH9 416 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 FBXL21Q9UKT6 434 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 MMP17Q9ULZ9 603 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 SLC17A4Q9Y2C5 497 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 NEUROG3Q9Y4Z2 214 aa3.3□□□□□ -1.88
LIG4-205ENST00000614526 ZNF106Q9H2Y7 1883 aaKnown RBP3.3□□□□□ -1.88
LIG4-205ENST00000614526 ZDBF2Q9HCK1 2354 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 IGKV1-8A0A0C4DH67 115 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 A0A1W2PPV9 198 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TCRBV3S1A0A5B6 114 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 ELOVL7A1L3X0 281 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 GSAPA4D1B5 854 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 C7orf72A4D263 438 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 FAM170BA6NMN3 283 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 CLIC1O00299 241 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 BTN3A3O00478 584 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 PLPP1O14494 284 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 SOCS2O14508 198 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 PRKD3O94806 890 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 C6orf47O95873 294 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 OPN1SWP03999 348 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 EIF2S1P05198 315 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 C8orf89P0DMQ9 161 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 HSD17B1P14061 328 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 PVRP15151 417 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 ACADSP16219 412 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 ZNF23P17027 643 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TYRP1P17643 537 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 POLR2CP19387 275 aaPredicted RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 HNRNPA2B1P22626 353 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 HTR1BP28222 390 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TIA1P31483 386 aaKnown RBP eCLIP3.29□□□□□ -1.88
LIG4-205ENST00000614526 SLC19A1P41440 591 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 CRATP43155 626 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 WNT3P56703 355 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 RPS26P62854 115 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 SNRPNP63162 240 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 MRPS21P82921 87 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 PRKCQQ04759 706 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TRAP1Q12931 704 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 CSTF3Q12996 717 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 MED21Q13503 144 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TDGQ13569 410 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 SPIDRQ14159 915 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 NKG7Q16617 165 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 ALG11Q2TAA5 492 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 UAP1L1Q3KQV9 507 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 ZIK1Q3SY52 487 aaPredicted RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 RUNDC3AQ59EK9 446 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.29□□□□□ -1.88
LIG4-205ENST00000614526 SWT1Q5T5J6 900 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 ATG9BQ674R7 924 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 PTCRAQ6ISU1 281 aaPredicted RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 ZFP1Q6P2D0 407 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 HMGN2P46Q86SG4 172 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TICAM1Q8IUC6 712 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 RIMKLAQ8IXN7 391 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TMEFF1Q8IYR6 380 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TBC1D21Q8IYX1 336 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 ADGRG5Q8IZF4 528 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 CBR4Q8N4T8 237 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 DPP10Q8N608 796 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 GLB1L3Q8NCI6 653 aaPredicted RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 OR4A15Q8NGL6 344 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 OR2A1Q8NGT9 310 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 TSPEARQ8WU66 669 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 CHTF18Q8WVB6 975 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 SMPDL3AQ92484 453 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 EXOSC8Q96B26 276 aaKnown RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 ITCHQ96J02 903 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 WDR92Q96MX6 357 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 EFHD1Q9BUP0 239 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 EFCAB11Q9BUY7 163 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 C8orf33Q9H7E9 229 aaPredicted RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 RMND5AQ9H871 391 aa3.29□□□□□ -1.88
LIG4-205ENST00000614526 C6orf203Q9P0P8 240 aaPredicted RBP3.29□□□□□ -1.88
LIG4-205ENST00000614526 ZNF624Q9P2J8 865 aaPredicted RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms