RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 CXCR2P25025 360 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 REEP5Q00765 189 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 TERF2Q15554 542 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 XKR6Q5GH73 641 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 C10orf62Q5T681 223 aaPredicted RBP14.83□□□□□ -0.04
SS18-216ENST00000580751 ATG9BQ674R7 924 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 PWWP2BQ6NUJ5 590 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 FBXO42Q6P3S6 717 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 TLDC1Q6P9B6 456 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 UNQ6494/PRO21346Q6UXR6 183 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 SLCO4C1Q6ZQN7 724 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 RNF165Q6ZSG1 346 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 FAM47EQ6ZV65 393 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 TMEM126BQ8IUX1 230 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 CLYBLQ8N0X4 340 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 TEX9Q8N6V9 391 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 BCAS4Q8TDM0 211 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 PTCD3Q96EY7 689 aaKnown RBP14.83□□□□□ -0.04
SS18-216ENST00000580751 ZNF285Q96NJ3 590 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 OR2A5Q96R48 311 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 EFCAB11Q9BUY7 163 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 SARGQ9BW04 601 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 ULBP3Q9BZM4 244 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 C20orf27Q9GZN8 174 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 PITHD1Q9GZP4 211 aaPredicted RBP14.83□□□□□ -0.04
SS18-216ENST00000580751 ENAMQ9NRM1 1142 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 SRPK3Q9UPE1 567 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 PCDHB3Q9Y5E6 796 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 AP1M2Q9Y6Q5 423 aa14.83□□□□□ -0.04
SS18-216ENST00000580751 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.82□□□□□ -0.04
SS18-216ENST00000580751 STMND1H3BQB6 276 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 TXNDC9O14530 226 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 NDUFAB1O14561 156 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 SNX3O60493 162 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 CPNE3O75131 537 aaKnown RBP14.82□□□□□ -0.04
SS18-216ENST00000580751 CHRNGP07510 517 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 HBQ1P09105 142 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 C1GALT1C1LP0DN25 315 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 ARRB2P32121 409 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 PCBP4P57723 403 aaKnown RBP14.82□□□□□ -0.04
SS18-216ENST00000580751 VSX2P58304 361 aaPredicted RBP14.82□□□□□ -0.04
SS18-216ENST00000580751 IRF8Q02556 426 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 ZNF33BQ06732 778 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 CHIT1Q13231 466 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 E2F2Q14209 437 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 GRM7Q14831 915 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 TBCCQ15814 346 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 GGTA1PQ4G0N0 100 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 PAGE2BQ5JRK9 111 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 FRMPD2BQ6IN97 320 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 GPRIN3Q6ZVF9 776 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 SPATA21Q7Z572 469 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 GOLGA7Q7Z5G4 137 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 CUZD1Q86UP6 607 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 PLD3Q8IV08 490 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 KRT78Q8N1N4 520 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 ZNF655Q8N720 491 aaPredicted RBP14.82□□□□□ -0.04
SS18-216ENST00000580751 TTC29Q8NA56 475 aaPredicted RBP14.82□□□□□ -0.04
SS18-216ENST00000580751 AGAP11Q8TF27 550 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 WDR34Q96EX3 536 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 NLNQ9BYT8 704 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 IPPKQ9H8X2 491 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 ZBTB26Q9HCK0 441 aa14.82□□□□□ -0.04
SS18-216ENST00000580751 LOC105369274A0A096LPK9 316 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 LOC102723532A0A0G2JNH3 316 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 TMEM8BA6NDV4 472 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 LRRC14BA6NHZ5 514 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 H0YGG7 62 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 H3BMH7 237 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 HDAC3O15379 428 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 LYPLA1O75608 230 aaPredicted RBP14.81□□□□□ -0.04
SS18-216ENST00000580751 STK17BO94768 372 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 KIAA0754O94854 1291 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 TIAF1O95411 115 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 EPORP19235 508 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 VARSP26640 1264 aaKnown RBP14.81□□□□□ -0.04
SS18-216ENST00000580751 GSTM2P28161 218 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 BCL6P41182 706 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 CASP2P42575 452 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 CDH13P55290 713 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 ARF3P61204 181 aaPredicted RBP14.81□□□□□ -0.04
SS18-216ENST00000580751 MEF2AQ02078 507 aaPredicted RBP14.81□□□□□ -0.04
SS18-216ENST00000580751 LAPTM5Q13571 262 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 SLBPQ14493 270 aaKnown RBP eCLIP14.81□□□□□ -0.04
SS18-216ENST00000580751 YOD1Q5VVQ6 348 aaPredicted RBP14.81□□□□□ -0.04
SS18-216ENST00000580751 OR4N4Q8N0Y3 316 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 CSNK1A1LQ8N752 337 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 ANKS4BQ8N8V4 417 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 MFSD9Q8NBP5 474 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 TTLQ8NG68 377 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 TRPC4APQ8TEL6 797 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 FGF11Q92914 225 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 SEC16BQ96JE7 1060 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 NDC1Q9BTX1 674 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 SLC29A3Q9BZD2 475 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 SLC7A5P2Q9GIP4 190 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 SPRTNQ9H040 489 aaPredicted RBP14.81□□□□□ -0.04
SS18-216ENST00000580751 NOL11Q9H8H0 719 aaKnown RBP14.81□□□□□ -0.04
SS18-216ENST00000580751 ACTR8Q9H981 624 aa14.81□□□□□ -0.04
SS18-216ENST00000580751 ACTR5Q9H9F9 607 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms