RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CAPN13Q6MZZ7 669 aaPredicted RBP9.71□□□□□ -0.85
VPS53-220ENST00000576149 XKR5Q6UX68 686 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 VTCN1Q7Z7D3 282 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 GALNT10Q86SR1 603 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 TMPRSS11BQ86T26 416 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 GTF2IRD2Q86UP8 949 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 NPAS3Q8IXF0 933 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 REPS1Q96D71 796 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 WDR34Q96EX3 536 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 NRBF2Q96F24 287 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 VMP1Q96GC9 406 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 MAGED4Q96JG8 741 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 SAMD11Q96NU1 681 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 LHPPQ9H008 270 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 FZD4Q9ULV1 537 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 PCDHGA4Q9Y5G9 962 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 PRRC2BQ5JSZ5 2229 aaKnown RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 hCG_2039718K7EN88 272 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 K7ESM1 405 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 SLC1A7O00341 560 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 ADH1CP00326 375 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 ABCB1P08183 1280 aaPredicted RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 FPR1P21462 350 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 PPIBP23284 216 aaKnown RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 ITGB7P26010 798 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 DNAJA1P31689 397 aaKnown RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 RPS6KA3P51812 740 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 MESP2Q0VG99 397 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 RAPSNQ13702 412 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 CAMK1Q14012 370 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 CATSPEREQ5SY80 951 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 ZNF765Q7L2R6 523 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 PIWIL3Q7Z3Z3 882 aaKnown RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 TRIM74Q86UV6 250 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 SYTL1Q8IYJ3 562 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 GPR156Q8NFN8 814 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 ZFP90Q8TF47 636 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 ZNF566Q969W8 418 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 NXPE3Q969Y0 559 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 ZNF707Q96C28 371 aaPredicted RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 HSH2DQ96JZ2 352 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 SGPP1Q9BX95 441 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 ZCCHC2Q9C0B9 1178 aaKnown RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 OR2AG1Q9H205 316 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 TRIT1Q9H3H1 467 aaKnown RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 SIRT5Q9NXA8 310 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 CORO2BQ9UQ03 480 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 EXO1Q9UQ84 846 aaKnown RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 MRPS23Q9Y3D9 190 aaKnown RBP9.71□□□□□ -0.86
VPS53-220ENST00000576149 NAALAD2Q9Y3Q0 740 aa9.71□□□□□ -0.86
VPS53-220ENST00000576149 LAMA2P24043 3122 aaKnown RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 GNG14A0A1W2PPG7 69 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 MYO1GB0I1T2 1018 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 PRRT4C9JH25 899 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 FOXE1O00358 373 aaPredicted RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 RNASET2O00584 256 aaKnown RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 TLL1O43897 1013 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 PCDH7O60245 1069 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 NOL3O60936 208 aaKnown RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 UGT2B11O75310 529 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 NUDT7P0C024 238 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 CCDC159P0C7I6 412 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 CCR3P51677 355 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 UBE3AQ05086 875 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 LRRC74AQ0VAA2 488 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 CDK5R2Q13319 367 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 GAB1Q13480 694 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 LAPTM4AQ15012 233 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 RGNQ15493 299 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 C9orf64Q5T6V5 341 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 GALNT5Q7Z7M9 940 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 TRAPPC5Q8IUR0 188 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 ETFBKMTQ8IXQ9 262 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 LAS2Q8IYD9 372 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 TMIEQ8NEW7 156 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS53-220ENST00000576149 ARRDC3Q96B67 414 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 CXorf40BQ96DE9 158 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 RSPRY1Q96DX4 576 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 NUS1Q96E22 293 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 LINC00615Q96LM1 132 aaPredicted RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 ASPSCR1Q9BZE9 553 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 ATP6V1HQ9UI12 483 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 BAG5Q9UL15 447 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 SH2B3Q9UQQ2 575 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 M0QX08 132 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 STK25O00506 426 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 DPM1O60762 260 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 DIRAS1O95057 198 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 FKBP9O95302 570 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 C1GALT1C1LP0DN25 315 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 HLA-EP13747 358 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 GPR1P46091 355 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 CRYBA2P53672 197 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 ITGA1P56199 1179 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 TAP2Q03519 686 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 ELP6Q0PNE2 266 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 NFATC3Q12968 1075 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 PPIGQ13427 754 aaKnown RBP eCLIP9.7□□□□□ -0.866e-7■■□□□ 12.6
VPS53-220ENST00000576149 KEAP1Q14145 624 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms