RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ADGRD2Q7Z7M1 963 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 NDRG1Q92597 394 aaKnown RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 RNF145Q96MT1 663 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 OSMRQ99650 979 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 TLR9Q9NR96 1032 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 TMPRSS4Q9NRS4 437 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 PCDHB12Q9Y5F1 795 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 ZNF729A6NN14 1252 aaPredicted RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 DSCR3O14972 297 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 MDM4O15151 490 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 MMP20O60882 483 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 GLRA3O75311 464 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 METTL18O95568 372 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 IFNA4P05014 189 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 ZNF865P0CJ78 1059 aaPredicted RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 SMIM10L2AP0DMW4 78 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 SMIM10L2BP0DMW5 78 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 TCF3P15923 654 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 DPYSL2Q16555 572 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 NOMO2Q5JPE7 1267 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 PPM1JQ5JR12 505 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 MORN1Q5T089 497 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 LUZP2Q86TE4 346 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 PGBD3Q8N328 593 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 KDF1Q8NAX2 398 aaPredicted RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 MTERF3Q96E29 417 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 MVB12BQ9H7P6 319 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 GALNT9Q9HCQ5 603 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 VSX1Q9NZR4 365 aaPredicted RBP10.5□□□□□ -0.73
CLK3-226ENST00000569406 SLC17A6Q9P2U8 582 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 SEC14L4Q9UDX3 406 aa10.5□□□□□ -0.73
CLK3-226ENST00000569406 GLTPD2A6NH11 291 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 MEIS3P2A8K0S8 358 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 TCAPO15273 167 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 PAGE1O75459 146 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 RECQL4O94761 1208 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 PAPSS2O95340 614 aaPredicted RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 ANGPTL1O95841 491 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 TPOP07202 933 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 GADD45AP24522 165 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 HLA-DMAP28067 261 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 HOXA6P31267 233 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 RFC2P35250 354 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 SOX6P35712 828 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 EIF2S3P41091 472 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 ETV5P41161 510 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 DCDC1P59894 354 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 PFKFB4Q16877 469 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 UAP1L1Q3KQV9 507 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 PAN2Q504Q3 1202 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 PRMT9Q6P2P2 845 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 SLC27A1Q6PCB7 646 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 RTL4Q6ZR62 310 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 PYROXD2Q8N2H3 581 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 NT5C3BQ969T7 300 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 BBS4Q96RK4 519 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 ZPBPQ9BS86 351 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 DPH7Q9BTV6 452 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 SMURF2Q9HAU4 748 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 INTS10Q9NVR2 710 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 HCN3Q9P1Z3 774 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 SSR3Q9UNL2 185 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 MRPL42Q9Y6G3 142 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 PTPRDP23468 1912 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 SMIM28A0A1B0GU29 152 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 BCLAF3A2AJT9 711 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 PDCD5O14737 125 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 TPP1O14773 563 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 SLC31A2O15432 143 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 MT-CO1P00395 513 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 MT-ND2P03891 347 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 GNALP38405 381 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 CAMK1Q14012 370 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 CBX2Q14781 532 aaPredicted RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 FNDC1Q4ZHG4 1894 aaPredicted RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 SLC9B2Q86UD5 537 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 NLRC5Q86WI3 1866 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 DENND1CQ8IV53 801 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 MS4A15Q8N5U1 240 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 LRRC17Q8N6Y2 441 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 LRRC52Q8N7C0 313 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 OR8D4Q8NGM9 314 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 RNASE11Q8TAA1 199 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 PHOSPHO1Q8TCT1 267 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 AP2M1Q96CW1 435 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 C11orf24Q96F05 449 aaPredicted RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 ITCHQ96J02 903 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 CHCHD6Q9BRQ6 235 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 ZNF385DQ9H6B1 395 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 AGO3Q9H9G7 860 aaKnown RBP10.49□□□□□ -0.73
CLK3-226ENST00000569406 CACNG4Q9UBN1 327 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 CCL15-CCL14A0A0B4J2E2 113 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 TGM6O95932 706 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 NCK1P16333 377 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 TNFSF8P32971 234 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 TIE1P35590 1138 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 GLRBP48167 497 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 GTF2A2P52657 109 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 ZNF33AQ06730 810 aa10.49□□□□□ -0.73
CLK3-226ENST00000569406 RAPSNQ13702 412 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms