RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 C19orf57Q0VDD7 668 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 GALNT1Q10472 559 aaPredicted RBP12.84□□□□□ -0.35
CLK3-218ENST00000566926 PTCHD3Q3KNS1 767 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 LINC00303Q3SY05 128 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 GKAP1Q5VSY0 366 aaPredicted RBP12.84□□□□□ -0.35
CLK3-218ENST00000566926 PCSK4Q6UW60 755 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 RNF44Q7L0R7 432 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 GPSM1Q86YR5 675 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 TCAIMQ8N3R3 496 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 SPATA6LQ8N4H0 392 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 OR6Y1Q8NGX8 325 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 BCAS4Q8TDM0 211 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 ATL1Q8WXF7 558 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 THAP4Q8WY91 577 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 PTERQ96BW5 349 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 L3HYPDHQ96EM0 354 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 ATOH8Q96SQ7 321 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 ZFYVE21Q9BQ24 234 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 PLCD4Q9BRC7 762 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 STOX2Q9P2F5 926 aaPredicted RBP12.84□□□□□ -0.35
CLK3-218ENST00000566926 NDOR1Q9UHB4 597 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 TAC3Q9UHF0 121 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 TNPO3Q9Y5L0 923 aaKnown RBP12.84□□□□□ -0.35
CLK3-218ENST00000566926 MED13Q9UHV7 2174 aa12.84□□□□□ -0.35
CLK3-218ENST00000566926 A0A0J9YVX5 310 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 CDC14CA4D256 554 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 TXNDC9O14530 226 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 HCRTR1O43613 425 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 KLK8O60259 260 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 DLX3O60479 287 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 NPHS1O60500 1241 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 EDF1O60869 148 aaKnown RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 SNNO75324 88 aaPredicted RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 SBK3P0C264 359 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 TROVE2P10155 538 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLK3-218ENST00000566926 ALAS2P22557 587 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 PGGT1BP53609 377 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 ALDH18A1P54886 795 aaKnown RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 HERVK_113P63132 956 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 CDKL1Q00532 357 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 BST1Q10588 318 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 LY6DQ14210 128 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 NCF4Q15080 339 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 OR4D1Q15615 310 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 TSNQ15631 228 aaKnown RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 UGT8Q16880 541 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 DEFB109BQ30KR1 87 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 CFAP157Q5JU67 520 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 ZNF385CQ66K41 422 aaPredicted RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 AGTRAPQ6RW13 159 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 ENDOVQ8N8Q3 282 aaKnown RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 PPFIBP2Q8ND30 876 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 CNDP1Q96KN2 507 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 ZNF285Q96NJ3 590 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 GBP5Q96PP8 586 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 CCT8L2Q96SF2 557 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 MECRQ9BV79 373 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 ERVK-6Q9BXR3 956 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 DRC3Q9H069 523 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 EML4Q9HC35 981 aaKnown RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 SLC6A20Q9NP91 592 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 ABCF3Q9NUQ8 709 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 TMEM184CQ9NVA4 438 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 GEMIN8Q9NWZ8 242 aaKnown RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 ARL15Q9NXU5 204 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 IFT80Q9P2H3 777 aaPredicted RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 DHCR7Q9UBM7 475 aaKnown RBP12.83□□□□□ -0.36
CLK3-218ENST00000566926 TUBD1Q9UJT1 453 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 ADAMTS6Q9UKP5 1117 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 TCFL5Q9UL49 500 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 OARD1Q9Y530 152 aa12.83□□□□□ -0.36
CLK3-218ENST00000566926 A0A1B0GX78 115 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 FITM1A5D6W6 292 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 NPEPPSL1A6NEC2 478 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 A8MT66 165 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 SUPT3HB4E1H0 165 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 DSCR3O14972 297 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 CTSVO60911 334 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 SUPT3HO75486 399 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 GFAPP14136 432 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 EZRP15311 586 aaKnown RBP12.82□□□□□ -0.36
CLK3-218ENST00000566926 IMPDH1P20839 514 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 DRD4P21917 467 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 GMPRP36959 345 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 SLC1A6P48664 564 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 HNMTP50135 292 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 SEC24CP53992 1094 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 EMP3P54852 163 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 VSX2P58304 361 aaPredicted RBP12.82□□□□□ -0.36
CLK3-218ENST00000566926 ABCE1P61221 599 aaKnown RBP12.82□□□□□ -0.36
CLK3-218ENST00000566926 TBPL1P62380 186 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 OCRLQ01968 901 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 TGFBIQ15582 683 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 NKAIN1Q4KMZ8 207 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 WASHC2DQ5SRD0 308 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 C1orf189Q5VU69 101 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 PRAMEF13Q5VWM6 474 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 MLIPQ5VWP3 458 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 ZNF425Q6IV72 752 aa12.82□□□□□ -0.36
CLK3-218ENST00000566926 CAPN13Q6MZZ7 669 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms