RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 MAGEB17A8MXT2 336 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 TXNDC9O14530 226 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 LSM1O15116 133 aaKnown RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 UBDO15205 165 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 B4GAT1O43505 415 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 PEX11AO75192 247 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 SERPIND1P05546 499 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 SERPINA6P08185 405 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 IDO1P14902 403 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 PVRP15151 417 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 ST6GAL1P15907 406 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 PTX3P26022 381 aaPredicted RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 CD1CP29017 333 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 PI4KAP42356 2102 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 RPS13P62277 151 aaKnown RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 YBX1P67809 324 aaKnown RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 HMGCS1Q01581 520 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 ACSM2AQ08AH3 577 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 CUL3Q13618 768 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 SPIDRQ14159 915 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 AP5B1Q2VPB7 878 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 TMEM35AQ53FP2 167 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 TMTC4Q5T4D3 741 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 CACHD1Q5VU97 1274 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 ACSM2BQ68CK6 577 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 FCRL6Q6DN72 434 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 TMEM71Q6P5X7 295 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 CHSY3Q70JA7 882 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 ALYREFQ86V81 257 aaKnown RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 ZFAND4Q86XD8 727 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 PLD3Q8IV08 490 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 CAMKVQ8NCB2 501 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 SRFBP1Q8NEF9 429 aaKnown RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 OR4D9Q8NGE8 314 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 C3orf30Q96M34 536 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 GFM1Q96RP9 751 aaKnown RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 MAP3K3Q99759 626 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 KLHL25Q9H0H3 589 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 HEY2Q9UBP5 337 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 KLHL3Q9UH77 587 aa12.27□□□□□ -0.45
CLK3-214ENST00000564096 EIF3LQ9Y262 564 aaKnown RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 ANKRD12Q6UB98 2062 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 ARHGEF17Q96PE2 2063 aaPredicted RBP12.26□□□□□ -0.45
CLK3-214ENST00000564096 A0A088AWK7 358 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 A0A0J9YVX5 310 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 SLC9B1P1A6NJY1 282 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 C4orf47A7E2U8 309 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 SEC22BO75396 215 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 ANKRD34CP0C6C1 535 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 PRR35P0CG20 571 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 CD59P13987 128 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 NCF2P19878 526 aaPredicted RBP12.26□□□□□ -0.45
CLK3-214ENST00000564096 ZNF10P21506 573 aaPredicted RBP12.26□□□□□ -0.45
CLK3-214ENST00000564096 LSSP48449 732 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 HSD11B2P80365 405 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 ILKQ13418 452 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 PWP1Q13610 501 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 SQLEQ14534 574 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 GSTA3Q16772 222 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 KHDRBS2Q5VWX1 349 aaKnown RBP12.26□□□□□ -0.45
CLK3-214ENST00000564096 CYB5D1Q6P9G0 228 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 LARP4Q71RC2 724 aaKnown RBP eCLIP12.26□□□□□ -0.45
CLK3-214ENST00000564096 PAGE2Q7Z2X7 111 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 NUDT13Q86X67 352 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 ANKRD53Q8N9V6 530 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 OR2T11Q8NH01 316 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 SLC13A3Q8WWT9 602 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 QRFPRQ96P65 431 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 NUDT22Q9BRQ3 303 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 MS4A8Q9BY19 250 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 ZNF768Q9H5H4 540 aaKnown RBP12.26□□□□□ -0.45
CLK3-214ENST00000564096 PARD6AQ9NPB6 346 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 ASIC5Q9NY37 505 aa12.26□□□□□ -0.45
CLK3-214ENST00000564096 RUVBL1Q9Y265 456 aaKnown RBP12.26□□□□□ -0.45
CLK3-214ENST00000564096 POLR3HQ9Y535 204 aaPredicted RBP12.26□□□□□ -0.45
CLK3-214ENST00000564096 ADAMTS9Q9P2N4 1935 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ARHGAP10A1A4S6 786 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 D6RAR5 112 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 EBAG9O00559 213 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 FCHO1O14526 889 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 SLC22A2O15244 555 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ZSCAN9O15535 394 aaPredicted RBP12.25□□□□□ -0.45
CLK3-214ENST00000564096 SH3BP5O60239 455 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 NRP2O60462 931 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 THRAP10827 490 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ACADVLP49748 655 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ATP4BP51164 291 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ARFIP1P53367 373 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 SKP1P63208 163 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 CCL7P80098 99 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 EMX2Q04743 252 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 TUBB3Q13509 450 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 RPS6KA2Q15349 733 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 TCTE1Q5JU00 501 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 C6orf136Q5SQH8 315 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 SNAP47Q5SQN1 464 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 MANEAQ5SRI9 462 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ADNP2Q6IQ32 1131 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 TRIM40Q6P9F5 258 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 Q6ZSR9 355 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms