RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZWINTO95229 277 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 ITGAXP20702 1163 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 CD82P27701 267 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 AHRP35869 848 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 SERPINB4P48594 390 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 CCNG1P51959 295 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 HYAL2Q12891 473 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 DTX1Q86Y01 620 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 MYLK4Q86YV6 388 aaPredicted RBP20.76■□□□□ 0.91
SNX1-210ENST00000560260 KRT78Q8N1N4 520 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 SNIP1Q8TAD8 396 aaKnown RBP20.76■□□□□ 0.91
SNX1-210ENST00000560260 PPP4R1Q8TF05 950 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 C4orf51C9J302 202 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 STMND1H3BQB6 276 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 UBFD1O14562 309 aaKnown RBP20.75■□□□□ 0.91
SNX1-210ENST00000560260 NDUFS4O43181 175 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 RAD1O60671 282 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 UGDHO60701 494 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 TRIM13O60858 407 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 CXCR2P25025 360 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 WDR4P57081 412 aaKnown RBP20.75■□□□□ 0.91
SNX1-210ENST00000560260 LCP2Q13094 533 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 LAPTM5Q13571 262 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 TGIF1Q15583 401 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 PAGE2BQ5JRK9 111 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 C1orf189Q5VU69 101 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 LIPJQ5W064 366 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 CES4AQ5XG92 561 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 LCN10Q6JVE6 187 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 RHBDD2Q6NTF9 364 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 ZCCHC23Q6ZST2 131 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 SYVN1Q86TM6 617 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 LAS2Q8IYD9 372 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 RNF175Q8N4F7 328 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 TTC29Q8NA56 475 aaPredicted RBP20.75■□□□□ 0.91
SNX1-210ENST00000560260 KCT2Q8NC54 265 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 NT5CQ8TCD5 201 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 SLC13A3Q8WWT9 602 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 ATP6V1E2Q96A05 226 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 GBP5Q96PP8 586 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 ZNF382Q96SR6 550 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 PITHD1Q9GZP4 211 aaPredicted RBP20.75■□□□□ 0.91
SNX1-210ENST00000560260 CUTCQ9NTM9 273 aa20.75■□□□□ 0.91
SNX1-210ENST00000560260 APC2O95996 2303 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 HYKKA2RU49 373 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 OR4F21O95013 312 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 CLDN9O95484 217 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 OTCP00480 354 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 SERPIND1P05546 499 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 HNF4AP41235 474 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 CPSF6Q16630 551 aaKnown RBP eCLIP20.74■□□□□ 0.91
SNX1-210ENST00000560260 GGTA1PQ4G0N0 100 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 MED27Q6P2C8 311 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 ATG14Q6ZNE5 492 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 DSELQ8IZU8 1212 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 TBC1D19Q8N5T2 526 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 METTL27Q8N6F8 245 aaPredicted RBP20.74■□□□□ 0.91
SNX1-210ENST00000560260 CAMKVQ8NCB2 501 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 OR7G3Q8NG95 312 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 OR6Y1Q8NGX8 325 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 AGAP11Q8TF27 550 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 FGF11Q92914 225 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 CLIP3Q96DZ5 547 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 NDC1Q9BTX1 674 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 SLC6A16Q9GZN6 736 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 RHBGQ9H310 441 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 TNFRSF12AQ9NP84 129 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 SRPK3Q9UPE1 567 aa20.74■□□□□ 0.91
SNX1-210ENST00000560260 WDR91A4D1P6 747 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 SLC35G6P0C7Q6 338 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 LIPCP11150 499 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 ARRB2P32121 409 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 ARL1P40616 181 aaPredicted RBP20.73■□□□□ 0.91
SNX1-210ENST00000560260 PCBP4P57723 403 aaKnown RBP20.73■□□□□ 0.91
SNX1-210ENST00000560260 CLN3Q13286 438 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 MAP7Q14244 749 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 ZRSR2Q15696 482 aaKnown RBP20.73■□□□□ 0.91
SNX1-210ENST00000560260 TMEM214Q6NUQ4 689 aaKnown RBP20.73■□□□□ 0.91
SNX1-210ENST00000560260 C6orf15Q6UXA7 325 aaPredicted RBP20.73■□□□□ 0.91
SNX1-210ENST00000560260 TTLL10Q6ZVT0 673 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 PRSS41Q7RTY9 318 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 MILR1Q7Z6M3 343 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 ZCCHC10Q8TBK6 192 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 MGARPQ8TDB4 240 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 ZNF473Q8WTR7 871 aaKnown RBP20.73■□□□□ 0.91
SNX1-210ENST00000560260 LRFN5Q96NI6 719 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 TRPS1Q9UHF7 1281 aa20.73■□□□□ 0.91
SNX1-210ENST00000560260 DMXL2Q8TDJ6 3036 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 H0YIV9 168 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 MEN1O00255 615 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 TAF4O00268 1085 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 FFAR3O14843 346 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 DSCR3O14972 297 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 GPR42O15529 346 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 FOXS1O43638 330 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 MLYCDO95822 493 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 B3GALT4O96024 378 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 PCNAP12004 261 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 HNRNPH1P31943 449 aaKnown RBP20.72■□□□□ 0.91
SNX1-210ENST00000560260 SLC18A1P54219 525 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms