RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 GAKO14976 1311 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 DMDP11532 3685 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 LCTP09848 1927 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 CCL15-CCL14A0A0B4J2E2 113 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 PRAMEF11O60813 436 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 HMMRO75330 724 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 ZSCAN5DPP0CG00 497 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 IGHV4-31P0DP07 118 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 MMP12P39900 470 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 PAX9P55771 341 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 ARF3P61204 181 aaPredicted RBP4.23□□□□□ -1.73
PRPF39-209ENST00000556353 SIRPAP78324 504 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 ARF1P84077 181 aaKnown RBP4.23□□□□□ -1.73
PRPF39-209ENST00000556353 CDK3Q00526 305 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 MS4A2Q01362 244 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 CCL15Q16663 113 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 SHROOM1Q2M3G4 852 aaPredicted RBP4.23□□□□□ -1.73
PRPF39-209ENST00000556353 C20orf194Q5TEA3 1177 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 FKBP1CQ5VVH2 108 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 CDC42EP5Q6NZY7 148 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 FIGLAQ6QHK4 219 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 LDB1Q86U70 411 aaPredicted RBP4.23□□□□□ -1.73
PRPF39-209ENST00000556353 CDC20BQ86Y33 519 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 ERC1Q8IUD2 1116 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 TMEM139Q8IV31 216 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 OR10G8Q8NGN5 311 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 TEKT1Q969V4 418 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 FAM210AQ96ND0 272 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 SPATC1LQ9H0A9 340 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 NOL7Q9UMY1 257 aaKnown RBP4.23□□□□□ -1.73
PRPF39-209ENST00000556353 ZNF148Q9UQR1 794 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 GBF1Q92538 1859 aa4.23□□□□□ -1.73
PRPF39-209ENST00000556353 SALL1Q9NSC2 1324 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 MEX3AA1L020 520 aaKnown RBP4.22□□□□□ -1.73
PRPF39-209ENST00000556353 PTGES3LE9PB15 166 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 MED24O75448 989 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 SRSF10O75494 262 aaKnown RBP4.22□□□□□ -1.73
PRPF39-209ENST00000556353 CIAO1O76071 339 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 GABRA5P31644 462 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 HADHAP40939 763 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 OPRL1P41146 370 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 TPD52P55327 224 aaPredicted RBP4.22□□□□□ -1.73
PRPF39-209ENST00000556353 TCP10Q12799 353 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 ELAVL2Q12926 359 aaKnown RBP4.22□□□□□ -1.73
PRPF39-209ENST00000556353 RIGQ13278 110 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 PPIL2Q13356 520 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 ALDH1L2Q3SY69 923 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 HSP90B2PQ58FF3 399 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 ZNF774Q6NX45 483 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 KRT77Q7Z794 578 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 ZSCAN30Q86W11 494 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.22□□□□□ -1.73
PRPF39-209ENST00000556353 CCDC107Q8WV48 283 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 SLCO2A1Q92959 643 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 FOXN4Q96NZ1 517 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 PAIP2Q9BPZ3 127 aaKnown RBP4.22□□□□□ -1.73
PRPF39-209ENST00000556353 URM1Q9BTM9 101 aaKnown RBP4.22□□□□□ -1.73
PRPF39-209ENST00000556353 CPVLQ9H3G5 476 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 SPHK1Q9NYA1 384 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 NUDT4Q9NZJ9 180 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 SEC63Q9UGP8 760 aaKnown RBP4.22□□□□□ -1.73
PRPF39-209ENST00000556353 TUBE1Q9UJT0 475 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 ODF2LQ9ULJ1 636 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 PLAGL1Q9UM63 463 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 ANGPTL3Q9Y5C1 460 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 ZNF236Q9UL36 1845 aa4.22□□□□□ -1.73
PRPF39-209ENST00000556353 LRRC37A2A6NM11 1700 aa4.21□□□□□ -1.73
PRPF39-209ENST00000556353 MAGEC1O60732 1142 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 ZWINTO95229 277 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 WDPCPO95876 746 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 NEFHP12036 1026 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 ACSL1P33121 698 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 SLC15A1P46059 708 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 GSCP56915 257 aaPredicted RBP4.21□□□□□ -1.74
PRPF39-209ENST00000556353 DCAF7P61962 342 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 TFCP2Q12800 502 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 IRF3Q14653 427 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 KCTD2Q14681 263 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 ITPRIPL2Q3MIP1 535 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 KLHL10Q6JEL2 608 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 Q6ZRP5 223 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 TMPRSS11FQ6ZWK6 438 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 ADGRA1Q86SQ6 560 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 AACSQ86V21 672 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 ERO1BQ86YB8 467 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 CEP57L1Q8IYX8 460 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 CDK20Q8IZL9 346 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 ARHGAP24Q8N264 748 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 VANGL1Q8TAA9 524 aaPredicted RBP4.21□□□□□ -1.74
PRPF39-209ENST00000556353 SMAP2Q8WU79 429 aaPredicted RBP4.21□□□□□ -1.74
PRPF39-209ENST00000556353 FAM151AQ8WW52 585 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 GTF3AQ92664 365 aaKnown RBP4.21□□□□□ -1.74
PRPF39-209ENST00000556353 ERO1AQ96HE7 468 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 SPHK2Q9NRA0 654 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 P4HTMQ9NXG6 502 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 ARHGEF38Q9NXL2 777 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 MROH7-TTC4A0A0A0MT08 1334 aa4.21□□□□□ -1.74
PRPF39-209ENST00000556353 A0A1B0GUL7 405 aa4.2□□□□□ -1.74
PRPF39-209ENST00000556353 C15orf61A6NNL5 157 aa4.2□□□□□ -1.74
PRPF39-209ENST00000556353 B4DLN1 442 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms