RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 NLNQ9BYT8 704 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 IFT80Q9P2H3 777 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-226ENST00000553011 PLAAQ9Y263 795 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 MAU2Q9Y6X3 613 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 TLN1Q9Y490 2541 aaKnown RBP13.44□□□□□ -0.26
PTCH1-226ENST00000553011 FOXS1O43638 330 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 SMIM24O75264 130 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 H2AFYO75367 372 aaKnown RBP13.43□□□□□ -0.26
PTCH1-226ENST00000553011 CREG1O75629 220 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 SERPIND1P05546 499 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 RAB40ALP0C0E4 278 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 CD22P20273 847 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 EEF1DP29692 281 aaKnown RBP13.43□□□□□ -0.26
PTCH1-226ENST00000553011 IRF8Q02556 426 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 CDC20Q12834 499 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 CHIT1Q13231 466 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 DOC2AQ14183 400 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 PCBP2Q15366 365 aaKnown RBP eCLIP13.43□□□□□ -0.26
PTCH1-226ENST00000553011 XKR6Q5GH73 641 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 GARNL3Q5VVW2 1013 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 SH2D5Q6ZV89 423 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 PRSS41Q7RTY9 318 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.43□□□□□ -0.26
PTCH1-226ENST00000553011 CNPY4Q8N129 248 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 ZCCHC10Q8TBK6 192 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 GPN3Q9UHW5 284 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-226ENST00000553011 ZFP69BQ9UJL9 534 aa13.43□□□□□ -0.26
PTCH1-226ENST00000553011 NUP210LQ5VU65 1888 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 A0A0A6YYC8 382 aaPredicted RBP13.42□□□□□ -0.26
PTCH1-226ENST00000553011 A8MT66 165 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 I3L1I5 382 aaPredicted RBP13.42□□□□□ -0.26
PTCH1-226ENST00000553011 FFAR3O14843 346 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 GPR42O15529 346 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 NDUFS4O43181 175 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 ONECUT2O95948 504 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 FURINP09958 794 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 SLC35G6P0C7Q6 338 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 EPB42P16452 691 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 AHRP35869 848 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 IL10RAQ13651 578 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 ERV3-1Q14264 604 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 ADNP2Q6IQ32 1131 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 TMEM214Q6NUQ4 689 aaKnown RBP13.42□□□□□ -0.26
PTCH1-226ENST00000553011 MRPL14Q6P1L8 145 aaKnown RBP13.42□□□□□ -0.26
PTCH1-226ENST00000553011 PRMT9Q6P2P2 845 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 TMIGD1Q6UXZ0 262 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 OVCH1Q7RTY7 1134 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 GOLGA7Q7Z5G4 137 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 LCA5Q86VQ0 697 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 C4orf33Q8N1A6 199 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 KRT78Q8N1N4 520 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 RIBC1Q8N443 379 aaPredicted RBP13.42□□□□□ -0.26
PTCH1-226ENST00000553011 COL26A1Q96A83 441 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 WDR34Q96EX3 536 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 PTCD3Q96EY7 689 aaKnown RBP13.42□□□□□ -0.26
PTCH1-226ENST00000553011 C17orf62Q9BQA9 187 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 DRC3Q9H069 523 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 EHD1Q9H4M9 534 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 ZNF304Q9HCX3 659 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 CTSFQ9UBX1 484 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 LGALS13Q9UHV8 139 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 TCFL5Q9UL49 500 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 EMCNQ9ULC0 261 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 TMCO1Q9UM00 188 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 ANGPTL3Q9Y5C1 460 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 TNPO3Q9Y5L0 923 aaKnown RBP13.42□□□□□ -0.26
PTCH1-226ENST00000553011 DOCK10Q96BY6 2186 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 SPTA1P02549 2419 aa13.42□□□□□ -0.26
PTCH1-226ENST00000553011 CDC14CA4D256 554 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 STX16-NPEPL1H3BU86 382 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 E2F3O00716 465 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 STX16O14662 325 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 KLF7O75840 302 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 WFS1O76024 890 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 GSTA1P08263 222 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 IL1RNP18510 177 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 FBLP22087 321 aaKnown RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 CXCR2P25025 360 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 CASP2P42575 452 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 MC1RQ01726 317 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 HYAL2Q12891 473 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 PWP1Q13610 501 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 GTF2H2Q13888 395 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 FAM53BQ14153 422 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 TBCCQ15814 346 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 NDUFA9Q16795 377 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 GTF2H2CQ6P1K8 395 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 RPS27LQ71UM5 84 aaKnown RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 SYVN1Q86TM6 617 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 AMER3Q8N944 861 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 OR9A4Q8NGU2 314 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 NT5CQ8TCD5 201 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 CREB3L4Q8TEY5 395 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 FKBP10Q96AY3 582 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 MVB12AQ96EY5 273 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 MMABQ96EY8 250 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 NSUN5Q96P11 429 aaKnown RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 EFCAB11Q9BUY7 163 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 ROPN1BQ9BZX4 212 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 AICDAQ9GZX7 198 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms