RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 GPX3P22352 226 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 ZNF763Q0D2J5 394 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 CYBRD1Q53TN4 286 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 RGMAQ96B86 450 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 GTPBP1O00178 669 aaKnown RBP15.74■□□□□ 0.11
CUX1-213ENST00000549414 GSRP00390 522 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 SP140Q13342 867 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 RFLNAQ6ZTI6 216 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 ERN2Q76MJ5 926 aaKnown RBP15.74■□□□□ 0.11
CUX1-213ENST00000549414 APIPQ96GX9 242 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 CNPPD1Q9BV87 410 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 HERC2P3Q9BVR0 1158 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 RETREG1Q9H6L5 497 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 SLAMF8Q9P0V8 285 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 ADAM30Q9UKF2 790 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 MRPS33Q9Y291 106 aaKnown RBP15.74■□□□□ 0.11
CUX1-213ENST00000549414 DLEC1Q9Y238 1755 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 OR6A2O95222 327 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 RPS17P08708 135 aaKnown RBP15.74■□□□□ 0.11
CUX1-213ENST00000549414 ITPKBP27987 946 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 HTR1EP28566 365 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 ITGA1P56199 1179 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 STXBP1P61764 594 aaKnown RBP15.74■□□□□ 0.11
CUX1-213ENST00000549414 OLR1P78380 273 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 PRR23BQ6ZRT6 265 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 OXR1Q8N573 874 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 LMNTD1Q8N9Z9 388 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 RAB2BQ8WUD1 216 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 C12orf43Q96C57 262 aaKnown RBP15.74■□□□□ 0.11
CUX1-213ENST00000549414 UBXN10Q96LJ8 280 aa15.74■□□□□ 0.11
CUX1-213ENST00000549414 FGF4P08620 206 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 CD36P16671 472 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 ARNTP27540 789 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 OXTRP30559 389 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 CPOXP36551 454 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 LARS2Q15031 903 aaKnown RBP15.73■□□□□ 0.11
CUX1-213ENST00000549414 DCUN1D3Q8IWE4 304 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 TRAM1L1Q8N609 369 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 FAR1Q8WVX9 515 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 RHBDF1Q96CC6 855 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 KCNH6Q9H252 994 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 CRNNQ9UBG3 495 aaPredicted RBP15.73■□□□□ 0.11
CUX1-213ENST00000549414 UTS2RQ9UKP6 389 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 CPSF4LA6NMK7 179 aaKnown RBP15.73■□□□□ 0.11
CUX1-213ENST00000549414 FPR1P21462 350 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 NFE2L1Q14494 772 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 LASP1Q14847 261 aaKnown RBP15.73■□□□□ 0.11
CUX1-213ENST00000549414 KAT8Q9H7Z6 458 aaKnown RBP15.73■□□□□ 0.11
CUX1-213ENST00000549414 CLEC4AQ9UMR7 237 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 HEPACAM2A8MVW5 462 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 FOXD2O60548 495 aaPredicted RBP15.73■□□□□ 0.11
CUX1-213ENST00000549414 AP2A2O94973 939 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 NPPAP01160 153 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 ANXA8P13928 327 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 RPS26P62854 115 aaKnown RBP15.73■□□□□ 0.11
CUX1-213ENST00000549414 VTCN1Q7Z7D3 282 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 RNF175Q8N4F7 328 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 FCRL4Q96PJ5 515 aa15.73■□□□□ 0.11
CUX1-213ENST00000549414 E7EQ34 232 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 H3BQ06 376 aaPredicted RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 CASKO14936 926 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 SCN2BO60939 215 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 WDR5P61964 334 aaKnown RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 ATP6AP1Q15904 470 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 IQCHQ86VS3 1027 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 NRSN1Q8IZ57 195 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 UXS1Q8NBZ7 420 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 OR8J3Q8NGG0 315 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 HUS1BQ8NHY5 278 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 CNIH3Q8TBE1 160 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 S100ZQ8WXG8 99 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 IGLON5A6NGN9 336 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 MROH6A6NGR9 719 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 LOC110117498-PIK3R3F6TDL0 507 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 B4GALT3O60512 393 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 LATS1O95835 1130 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 C6P13671 934 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 HOXB2P14652 356 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 PSMA1P25786 263 aaKnown RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 HLA-FP30511 346 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 CRISP3P54108 245 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 PCDH1Q08174 1060 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 GRIN2CQ14957 1233 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 PYDC2Q56P42 97 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 MFSD6LQ8IWD5 586 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 MARVELD2Q8N4S9 558 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 DTWD1Q8N5C7 304 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 GPATCH1Q9BRR8 931 aaKnown RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 C1QTNF1Q9BXJ1 281 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 VAPAQ9P0L0 249 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 POLR1DQ9Y2S0 133 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 PCDHB3Q9Y5E6 796 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 POLR2AP24928 1970 aaKnown RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 FAM47E-STBD1D6RA91 191 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 JUPP14923 745 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 CSNK2A2P19784 350 aaPredicted RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 ID2Q02363 134 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 VMACQ2NL98 169 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 CRB2Q5IJ48 1285 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 TLDC1Q6P9B6 456 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms