RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PCDH7O60245 1069 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 NAT1P18440 290 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 HPCAL1P37235 193 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 STARD3Q14849 445 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 CPTPQ5TA50 214 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 ANXA8L1Q5VT79 327 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 TTC33Q6PID6 262 aaPredicted RBP13.25□□□□□ -0.29
RTN3-210ENST00000540798 FAM129CQ86XR2 697 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 ZDHHC13Q8IUH4 622 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 SH3KBP1Q96B97 665 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 MENTQ9BUN1 341 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 BHLHE41Q9C0J9 482 aaPredicted RBP13.25□□□□□ -0.29
RTN3-210ENST00000540798 SAMD4AQ9UPU9 718 aaKnown RBP13.25□□□□□ -0.29
RTN3-210ENST00000540798 MAGED1Q9Y5V3 778 aaPredicted RBP13.25□□□□□ -0.29
RTN3-210ENST00000540798 CEPT1Q9Y6K0 416 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 IGLON5A6NGN9 336 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 THRBP10828 461 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 KELP23276 732 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 HKDC1Q2TB90 917 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 METRNLQ641Q3 311 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 ANKRD26P1Q6NSI1 321 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 AMZ2Q86W34 360 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 DCUN1D3Q8IWE4 304 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 METTL4Q8N3J2 472 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 LMNTD1Q8N9Z9 388 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 RAD51AP1Q96B01 352 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 ELSPBP1Q96BH3 223 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 LGR4Q9BXB1 951 aa13.25□□□□□ -0.29
RTN3-210ENST00000540798 MID1O15344 667 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 CLIC3O95833 236 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 RPL10P27635 214 aaKnown RBP13.24□□□□□ -0.29
RTN3-210ENST00000540798 ZNF763Q0D2J5 394 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 VEZF1Q14119 521 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ARHGAP19Q14CB8 494 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 CST6Q15828 149 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 OTUD3Q5T2D3 398 aaPredicted RBP13.24□□□□□ -0.29
RTN3-210ENST00000540798 COMMD6Q7Z4G1 85 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 VN1R5Q7Z5H4 357 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 LRRTM4Q86VH4 590 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ADHFE1Q8IWW8 467 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 OR5AR1Q8NGP9 310 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 OR5K1Q8NHB7 308 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 FAM131CQ96AQ9 280 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 MBOAT4Q96T53 435 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 AP1M2Q9Y6Q5 423 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 A0A087WXM4 84 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 GPR89AB7ZAQ6 455 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 GPR89BP0CG08 455 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 LSAMPQ13449 338 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 CYP2A13Q16696 494 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 HIST2H2ACQ16777 129 aaPredicted RBP13.24□□□□□ -0.29
RTN3-210ENST00000540798 ZNF385BQ569K4 471 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 PRAMEF14Q5SWL7 426 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 PRAMEF13Q5VWM6 474 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 HIST2H2AA3Q6FI13 130 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ANKRD54Q6NXT1 300 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ZNF621Q6ZSS3 439 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 TMEM179BQ7Z7N9 219 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 STK32CQ86UX6 486 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ZNF786Q8N393 782 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 OR5K2Q8NHB8 316 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ZFP90Q8TF47 636 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 MYADMQ96S97 322 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 PBX4Q9BYU1 374 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 GABARAPL1Q9H0R8 117 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 REEP4Q9H6H4 257 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 SOX17Q9H6I2 414 aaPredicted RBP13.24□□□□□ -0.29
RTN3-210ENST00000540798 TPT1P8Q9HAU6 139 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 MYNNQ9NPC7 610 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 PTTG2Q9NZH5 202 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ADH1BP00325 375 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ALBP02768 609 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 PCCBP05166 539 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 PPIBP23284 216 aaKnown RBP13.24□□□□□ -0.29
RTN3-210ENST00000540798 TRIM23P36406 574 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 DCTP40126 519 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 IST1P53990 364 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.24□□□□□ -0.29
RTN3-210ENST00000540798 ZCCHC8Q6NZY4 707 aaKnown RBP13.24□□□□□ -0.29
RTN3-210ENST00000540798 OFCC1Q8IZS5 231 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 GPR156Q8NFN8 814 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 UBE2E3Q969T4 207 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 RBM4BQ9BQ04 359 aaKnown RBP13.24□□□□□ -0.29
RTN3-210ENST00000540798 RBM4Q9BWF3 364 aaKnown RBP13.24□□□□□ -0.29
RTN3-210ENST00000540798 CORO2BQ9UQ03 480 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 ASF1AQ9Y294 204 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 PRKAB1Q9Y478 270 aa13.24□□□□□ -0.29
RTN3-210ENST00000540798 TRPM6Q9BX84 2022 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 APODP05090 189 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 C5AR1P21730 350 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 CDH15P55291 814 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 DMPKQ09013 629 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 EPS8Q12929 822 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 GAB1Q13480 694 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 FAM71E1Q6IPT2 247 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 TRIML2Q8N7C3 387 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 IL1RAPQ9NPH3 570 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 LINC01565O15544 149 aa13.23□□□□□ -0.29
RTN3-210ENST00000540798 CPSF4O95639 269 aaKnown RBP13.23□□□□□ -0.29
RTN3-210ENST00000540798 FURINP09958 794 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms