RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 COX6A1P12074 109 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 STMN1P16949 149 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 IL10P22301 178 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 SPRP35270 261 aaPredicted RBP10.95□□□□□ -0.66
RTN3-209ENST00000538995 AHRP35869 848 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 MAGEA4P43358 317 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 SCTRP47872 440 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 GPX6P59796 221 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 ATP6V0D1P61421 351 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 REEP5Q00765 189 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 RGS1Q08116 209 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 USP10Q14694 798 aaKnown RBP10.95□□□□□ -0.66
RTN3-209ENST00000538995 TSNQ15631 228 aaKnown RBP10.95□□□□□ -0.66
RTN3-209ENST00000538995 GRTP1Q5TC63 336 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 TMEM205Q6UW68 189 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 RIPOR1Q6ZS17 1223 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 Q6ZS92 163 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 LAPTM4BQ86VI4 370 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 THOC6Q86W42 341 aaKnown RBP10.95□□□□□ -0.66
RTN3-209ENST00000538995 KBTBD2Q8IY47 623 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 IQCKQ8N0W5 287 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 TCAIMQ8N3R3 496 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 AFAP1L2Q8N4X5 818 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 OR9A4Q8NGU2 314 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 NT5CQ8TCD5 201 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 C16orf45Q96MC5 204 aaPredicted RBP10.95□□□□□ -0.66
RTN3-209ENST00000538995 EGFL8Q99944 293 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 WDR77Q9BQA1 342 aaPredicted RBP10.95□□□□□ -0.66
RTN3-209ENST00000538995 AIF1LQ9BQI0 150 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 YIPF2Q9BWQ6 316 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 EPS8L2Q9H6S3 715 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 ZFP69BQ9UJL9 534 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 MTO1Q9Y2Z2 717 aaKnown RBP10.95□□□□□ -0.66
RTN3-209ENST00000538995 NUP210LQ5VU65 1888 aa10.95□□□□□ -0.66
RTN3-209ENST00000538995 IGHV1-45A0A0A0MS14 117 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 CLEC18AA5D8T8 446 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 MASP2O00187 686 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 FFAR3O14843 346 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 GPR42O15529 346 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 OR1F1O43749 312 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 ALOX12BO75342 701 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 VPS4BO75351 444 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 PIAS1O75925 651 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 KLHL18O94889 574 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 STATHP02808 62 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 SERPINA7P05543 415 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 C8orf89P0DMQ9 161 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 IL1RNP18510 177 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 GSTM2P28161 218 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 SLC6A12P48065 614 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 RAB10P61026 200 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 MAT1AQ00266 395 aaKnown RBP10.94□□□□□ -0.66
RTN3-209ENST00000538995 Q0VFX4 171 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 TGFBIQ15582 683 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 INPP5JQ15735 1006 aaPredicted RBP10.94□□□□□ -0.66
RTN3-209ENST00000538995 SYT16Q17RD7 645 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 CATSPEREQ5SY80 951 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 NXPE4Q6UWF7 544 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 CLEC18BQ6UXF7 455 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 CEP128Q6ZU80 1094 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 ABHD13Q7L211 337 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 PRSS41Q7RTY9 318 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 TMPRSS11BQ86T26 416 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 CCDC25Q86WR0 208 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 CTAGE3PQ8IX95 158 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 PARP9Q8IXQ6 854 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 KCT2Q8NC54 265 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 CLEC18CQ8NCF0 446 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 TRPV3Q8NET8 790 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 ZCCHC10Q8TBK6 192 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 METTL21AQ8WXB1 218 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 C8orf44Q96CB5 159 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 RHBDF1Q96CC6 855 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 THOC3Q96J01 351 aaKnown RBP10.94□□□□□ -0.66
RTN3-209ENST00000538995 SEC16BQ96JE7 1060 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 TSNARE1Q96NA8 513 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 OR1F2PQ96R84 312 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 MFRPQ9BY79 579 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 SLC29A3Q9BZD2 475 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 PITHD1Q9GZP4 211 aaPredicted RBP10.94□□□□□ -0.66
RTN3-209ENST00000538995 VN1R1Q9GZP7 353 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 ILKAPQ9H0C8 392 aaPredicted RBP10.94□□□□□ -0.66
RTN3-209ENST00000538995 ZNF700Q9H0M5 742 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 CNOT10Q9H9A5 744 aaKnown RBP10.94□□□□□ -0.66
RTN3-209ENST00000538995 CLK4Q9HAZ1 481 aaKnown RBP10.94□□□□□ -0.66
RTN3-209ENST00000538995 ZNF160Q9HCG1 818 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 LRRC4CQ9HCJ2 640 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 C19orf25Q9UFG5 118 aaPredicted RBP10.94□□□□□ -0.66
RTN3-209ENST00000538995 MKL2Q9ULH7 1088 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 VPS4AQ9UN37 437 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 SLC22A14Q9Y267 594 aa10.94□□□□□ -0.66
RTN3-209ENST00000538995 USP9XQ93008 2570 aaPredicted RBP10.93□□□□□ -0.66
RTN3-209ENST00000538995 MDC1Q14676 2089 aaKnown RBP10.93□□□□□ -0.66
RTN3-209ENST00000538995 URADA6NGE7 173 aa10.93□□□□□ -0.66
RTN3-209ENST00000538995 SGK494L7N484 410 aa10.93□□□□□ -0.66
RTN3-209ENST00000538995 PHGDHO43175 533 aaKnown RBP10.93□□□□□ -0.66
RTN3-209ENST00000538995 RDH16O75452 317 aa10.93□□□□□ -0.66
RTN3-209ENST00000538995 TUBB4AP04350 444 aa10.93□□□□□ -0.66
RTN3-209ENST00000538995 PRR35P0CG20 571 aa10.93□□□□□ -0.66
RTN3-209ENST00000538995 CCDC166P0CW27 439 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms