RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 TMEM199Q8N511 208 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 CCDC185Q8N715 623 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 LINC01465Q8N7H1 131 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 SYT8Q8NBV8 401 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 OR8J3Q8NGG0 315 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 MCOLN3Q8TDD5 553 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 SLC35F5Q8WV83 523 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 HEXDCQ8WVB3 486 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 HTRA1Q92743 480 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 MYDGFQ969H8 173 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 RGMAQ96B86 450 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 MTFMTQ96DP5 389 aaKnown RBP6.39□□□□□ -1.39
USP28-202ENST00000535607 LGALS12Q96DT0 336 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 YIPF6Q96EC8 236 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 CCDC115Q96NT0 180 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 GPR78Q96P69 363 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 TWNKQ96RR1 684 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 CDK5RAP1Q96SZ6 601 aaKnown RBP6.39□□□□□ -1.39
USP28-202ENST00000535607 CSF3RQ99062 836 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 SEPHS2Q99611 448 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 COQ7Q99807 217 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 TBL1YQ9BQ87 522 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 GORASP2Q9H8Y8 452 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 RPRD1BQ9NQG5 326 aaKnown RBP6.39□□□□□ -1.39
USP28-202ENST00000535607 CHRAC1Q9NRG0 131 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 GIMAP4Q9NUV9 329 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 CMTM6Q9NX76 183 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 UBA2Q9UBT2 640 aaPredicted RBP6.39□□□□□ -1.39
USP28-202ENST00000535607 POLG2Q9UHN1 485 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 OSGIN1Q9UJX0 560 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 OGDHLQ9ULD0 1010 aa6.39□□□□□ -1.39
USP28-202ENST00000535607 UBE2QL1A1L167 161 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 C17orf102A2RUQ5 167 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 PMS2P1A4D2B8 440 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 MYADML2A6NDP7 307 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 HMX3A6NHT5 357 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 TMEM233B4DJY2 109 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 PTGES3LE9PB15 166 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 TMX2-CTNND1H3BSU7 103 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 FAM20BO75063 409 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 GUCY1B2O75343 617 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 GPR32O75388 356 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 PDE9AO76083 593 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 MLYCDO95822 493 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 CLIC3O95833 236 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 PGK1P00558 417 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 CST1P01037 141 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 RPLP0P05388 317 aaKnown RBP6.38□□□□□ -1.39
USP28-202ENST00000535607 ASGR1P07306 291 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 SBK3P0C264 359 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 CCL5P13501 91 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 HGFP14210 728 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 ALOX12P18054 663 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 PCMT1P22061 227 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 NMBRP28336 390 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 AXLP30530 894 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 OXTRP30559 389 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 CYP2C18P33260 490 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 POLR2IP36954 125 aaKnown RBP6.38□□□□□ -1.39
USP28-202ENST00000535607 HNF4AP41235 474 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 IL12RB1P42701 662 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 RPS5P46782 204 aaKnown RBP6.38□□□□□ -1.39
USP28-202ENST00000535607 PPP3CCP48454 512 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 RGS7P49802 495 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 GZMKP49863 264 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 POLR2JP52435 117 aaKnown RBP6.38□□□□□ -1.39
USP28-202ENST00000535607 LBX1P52954 281 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 ACLYP53396 1101 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 RAB25P57735 213 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 IFITM2Q01629 132 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 HHEXQ03014 270 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 EMX1Q04741 257 aaPredicted RBP6.38□□□□□ -1.39
USP28-202ENST00000535607 HGFACQ04756 655 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 ELP6Q0PNE2 266 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 PRKG2Q13237 762 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 MAD2L1Q13257 205 aaPredicted RBP6.38□□□□□ -1.39
USP28-202ENST00000535607 AQP6Q13520 282 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 IL10RAQ13651 578 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 RCAN2Q14206 197 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 CSHL1Q14406 222 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 ZNF267Q14586 743 aaPredicted RBP6.38□□□□□ -1.39
USP28-202ENST00000535607 TBR1Q16650 682 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 IMPG1Q17R60 797 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 C3orf36Q3SXR2 165 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 TOR1AIP1Q5JTV8 583 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 ZNF678Q5SXM1 525 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.38□□□□□ -1.39
USP28-202ENST00000535607 CERCAMQ5T4B2 595 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 TRNP1Q6NT89 227 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 NEK5Q6P3R8 708 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 GLB1LQ6UWU2 654 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 CCBE1Q6UXH8 406 aaPredicted RBP6.38□□□□□ -1.39
USP28-202ENST00000535607 IDO2Q6ZQW0 420 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 ZNF767PQ75MW2 155 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 DSG4Q86SJ6 1040 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 TRIM69Q86WT6 500 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 DENND1CQ8IV53 801 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 FAM9CQ8IZT9 166 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 SDR16C5Q8N3Y7 309 aa6.38□□□□□ -1.39
USP28-202ENST00000535607 DPP10Q8N608 796 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms