RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 H7BY64 318 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 SAP18O00422 153 aaKnown RBP19.87■□□□□ 0.77
VPS28-209ENST00000528142 TIPRLO75663 272 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 UMPSP11172 480 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 PSMA4P25789 261 aaKnown RBP19.87■□□□□ 0.77
VPS28-209ENST00000528142 HTR1BP28222 390 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 AKT2P31751 481 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 DGKEP52429 567 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 KRT33BQ14525 404 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 CYP51A1Q16850 503 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 ANKRD26P1Q6NSI1 321 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 WASH2PQ6VEQ5 465 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 ERMP1Q7Z2K6 904 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 CALHM3Q86XJ0 350 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 ANKRD53Q8N9V6 530 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 PAPD5Q8NDF8 572 aaKnown RBP19.87■□□□□ 0.77
VPS28-209ENST00000528142 OR2A1Q8NGT9 310 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 CDC26Q8NHZ8 85 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 AURKBQ96GD4 344 aaPredicted RBP19.87■□□□□ 0.77
VPS28-209ENST00000528142 PRAP1Q96NZ9 151 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 AURKCQ9UQB9 309 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 HS3ST3A1Q9Y663 406 aa19.87■□□□□ 0.77
VPS28-209ENST00000528142 HNRNPRO43390 633 aaKnown RBP19.86■□□□□ 0.77
VPS28-209ENST00000528142 PRICKLE3O43900 615 aaPredicted RBP19.86■□□□□ 0.77
VPS28-209ENST00000528142 IL10P22301 178 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 YPEL5P62699 121 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 PRDX1Q06830 199 aaKnown RBP19.86■□□□□ 0.77
VPS28-209ENST00000528142 ZNF763Q0D2J5 394 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 TBCELQ5QJ74 424 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 PHACTR4Q8IZ21 702 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 TRPV3Q8NET8 790 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 TSACCQ96A04 125 aaPredicted RBP19.86■□□□□ 0.77
VPS28-209ENST00000528142 DUSP26Q9BV47 211 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 SEMA6AQ9H2E6 1030 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 ATP6V1HQ9UI12 483 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 INVSQ9Y283 1065 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 PCM1Q15154 2024 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 IGKV1-8A0A0C4DH67 115 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 EML2O95834 649 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 IGHV4-34P06331 123 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 AK4P27144 223 aaPredicted RBP19.86■□□□□ 0.77
VPS28-209ENST00000528142 CSNK1G2P78368 415 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 CPTPQ5TA50 214 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 ANO7Q6IWH7 933 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 ZNF852Q6ZMS4 543 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 SYT13Q7L8C5 426 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 AMIGO2Q86SJ2 522 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 SLC9B2Q86UD5 537 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 C10orf111Q8N326 155 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 PGBD3Q8N328 593 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 CXorf40BQ96DE9 158 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 NSMCE2Q96MF7 247 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 C6orf106Q9H6K1 298 aaPredicted RBP19.86■□□□□ 0.77
VPS28-209ENST00000528142 GORASP2Q9H8Y8 452 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 CNOT11Q9UKZ1 510 aaKnown RBP19.86■□□□□ 0.77
VPS28-209ENST00000528142 PCOLCE2Q9UKZ9 415 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 PCDHB11Q9Y5F2 797 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 HEBP2Q9Y5Z4 205 aa19.86■□□□□ 0.77
VPS28-209ENST00000528142 CHURC1-FNTBB4DL54 471 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 GBAP04062 536 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 BMP2P12643 396 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 SERPINB1P30740 379 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 HPCAL1P37235 193 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 CCR5P51681 352 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 DEPDC1Q5TB30 811 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 RD3Q7Z3Z2 195 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 ICA1LQ8NDH6 482 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 TNIP2Q8NFZ5 429 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 MAFAQ8NHW3 353 aaPredicted RBP19.85■□□□□ 0.77
VPS28-209ENST00000528142 CCL4L1Q8NHW4 92 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 C16orf78Q8WTQ4 265 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 BTBD9Q96Q07 612 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 PANX1Q96RD7 426 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 PRPF18Q99633 342 aaKnown RBP19.85■□□□□ 0.77
VPS28-209ENST00000528142 MS4A8Q9BY19 250 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 KIR3DX1Q9H7L2 352 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 C2orf42Q9NWW7 574 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 BTNL2Q9UIR0 455 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 ANAPC2Q9UJX6 822 aa19.85■□□□□ 0.77
VPS28-209ENST00000528142 FEZF1A0PJY2 475 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 ELOVL7A1L3X0 281 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 ANKDD1BA6NHY2 528 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 FAM220BPB1ANY3 271 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 KLK1P06870 262 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 ANXA6P08133 673 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 ZNF26P17031 533 aaPredicted RBP19.84■□□□□ 0.77
VPS28-209ENST00000528142 SRP54P61011 504 aaKnown RBP19.84■□□□□ 0.77
VPS28-209ENST00000528142 ALG11Q2TAA5 492 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 MTX3Q5HYI7 312 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 KHDRBS2Q5VWX1 349 aaKnown RBP19.84■□□□□ 0.77
VPS28-209ENST00000528142 Q6ZSR6 202 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 CLECL1Q8IZS7 167 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 ANKFN1Q8N957 763 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 TMEM168Q9H0V1 697 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 REEP4Q9H6H4 257 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 MYNNQ9NPC7 610 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 AGPAT4Q9NRZ5 378 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 COLEC10Q9Y6Z7 277 aa19.84■□□□□ 0.77
VPS28-209ENST00000528142 TOR1BO14657 336 aa19.83■□□□□ 0.77
VPS28-209ENST00000528142 SEMA3DO95025 777 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms