RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ISCA2Q86U28 154 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 CCDC25Q86WR0 208 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 PARP9Q8IXQ6 854 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 CENPLQ8N0S6 344 aaPredicted RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 NKAPQ8N5F7 415 aaKnown RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 ZCCHC10Q8TBK6 192 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 CREB3L4Q8TEY5 395 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 NACC2Q96BF6 587 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 MIEF2Q96C03 454 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 THAP11Q96EK4 314 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 C19orf60Q96EN9 201 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 MMABQ96EY8 250 aaPredicted RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 SMIM10Q96HG1 83 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 IP6K3Q96PC2 410 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 WDR77Q9BQA1 342 aaPredicted RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 CRB3Q9BUF7 120 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 KLHL31Q9H511 634 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 GPAMQ9HCL2 828 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 LANCL2Q9NS86 450 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 SEMA3GQ9NS98 782 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 GPR83Q9NYM4 423 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 NINJ2Q9NZG7 142 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 ZNF282Q9UDV7 671 aaPredicted RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 NTNG1Q9Y2I2 539 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 UTP11Q9Y3A2 253 aaKnown RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 MAP4K5Q9Y4K4 846 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 UTP20O75691 2785 aaKnown RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 LRRK2Q5S007 2527 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 IGHV1-45A0A0A0MS14 117 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 IGHV3-20A0A0C4DH32 117 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 TRBC2A0A5B9 178 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 ZNF860A6NHJ4 632 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 OR1F1O43749 312 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 RDH16O75452 317 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 NSA2O95478 260 aaKnown RBP10.08□□□□□ -0.8
CD44-227ENST00000528086 CD63P08962 238 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 GSTA2P09210 222 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 CCDC166P0CW27 439 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 PIM1P11309 404 aaPredicted RBP10.08□□□□□ -0.8
CD44-227ENST00000528086 MTHFD2P13995 350 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 CCND1P24385 295 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 GGT5P36269 586 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 UQCRFS1P47985 274 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 CCR8P51685 355 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 EMP2P54851 167 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 RRADP55042 308 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 IRF9Q00978 393 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 CAV1Q03135 178 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 WHAMMP3Q1A5X7 153 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 VWA5B1Q5TIE3 1220 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 FAAH2Q6GMR7 532 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 NXPE4Q6UWF7 544 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 LANCL3Q6ZV70 420 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 ASPGQ86U10 573 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 CUZD1Q86UP6 607 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 PPM1NQ8N819 430 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 TEX19Q8NA77 164 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 GABPB2Q8TAK5 448 aaPredicted RBP10.08□□□□□ -0.8
CD44-227ENST00000528086 NT5CQ8TCD5 201 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 SLC13A3Q8WWT9 602 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 SLC5A11Q8WWX8 675 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 RERGQ96A58 199 aaPredicted RBP10.08□□□□□ -0.8
CD44-227ENST00000528086 IMMP1LQ96LU5 166 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 FER1L6-AS2Q96M78 137 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 GPR78Q96P69 363 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 ATOH8Q96SQ7 321 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 HAUS8Q9BT25 410 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 FUT8Q9BYC5 575 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 SLC6A16Q9GZN6 736 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 VN1R1Q9GZP7 353 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 RAB17Q9H0T7 212 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 NSMCE4AQ9NXX6 385 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 HCN3Q9P1Z3 774 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 CTNNAL1Q9UBT7 734 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 PTBP2Q9UKA9 531 aaKnown RBP10.08□□□□□ -0.8
CD44-227ENST00000528086 NXT1Q9UKK6 140 aaKnown RBP10.08□□□□□ -0.8
CD44-227ENST00000528086 ZNF451Q9Y4E5 1061 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 PCDHGB7Q9Y5F8 929 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 POLEQ07864 2286 aa10.08□□□□□ -0.8
CD44-227ENST00000528086 ZGRF1Q86YA3 2104 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 SVILO95425 2214 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 NCF1BA6NI72 391 aaPredicted RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 NCF1CA8MVU1 366 aaPredicted RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 H0YIG0 161 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 PEX12O00623 359 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 NDC80O14777 642 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 HIST1H2AGP0C0S8 130 aaPredicted RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 NCF1P14598 390 aaPredicted RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 HIST1H2ADP20671 130 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 SOX11P35716 441 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 AGTR2P50052 363 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 RAB10P61026 200 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 OLR1P78380 273 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 RHAGQ02094 409 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 KCNC4Q03721 635 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 OCA2Q04671 838 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 EEF1A2Q05639 463 aaKnown RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 AIMP2Q13155 320 aaKnown RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 BMPR2Q13873 1038 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 CSHL1Q14406 222 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms