RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 RNF130Q86XS8 419 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC30A8Q8IWU4 369 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 CLECL1Q8IZS7 167 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PAPD5Q8NDF8 572 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 UFD1Q92890 307 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC39A13Q96H72 371 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 TRNT1Q96Q11 434 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 OR51B5Q9H339 312 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DNAJC27Q9NZQ0 273 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SPATA7Q9P0W8 599 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF840PA6NDX5 716 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CCRL2O00421 344 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 BTN3A3O00478 584 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 E2F3O00716 465 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 SSNA1O43805 119 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 SLITRK5O94991 958 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CDRT1O95170 752 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 DHFRP00374 187 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 H1F0P07305 194 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 GADD45AP24522 165 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 HRH2P25021 359 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 POLR2IP36954 125 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 PPIGQ13427 754 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 EXOC3L2Q2M3D2 409 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 IRAK1BP1Q5VVH5 260 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 TPGS2Q68CL5 300 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 THOC7Q6I9Y2 204 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CXorf57Q6NSI4 855 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 TBPL2Q6SJ96 375 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 GDPD4Q6W3E5 623 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 Q6ZSR9 355 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 VN1R5Q7Z5H4 357 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 UXS1Q8NBZ7 420 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 FLCNQ8NFG4 579 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CHPT1Q8WUD6 406 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 APIPQ96GX9 242 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF583Q96ND8 569 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 FCRL4Q96PJ5 515 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 FERD3LQ96RJ6 166 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM129BQ96TA1 746 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ARFGEF1Q9Y6D6 1849 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 TBC1D3BA6NDS4 549 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CHST10O43529 356 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 PI15O43692 258 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 SOCS5O75159 536 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 BCHEP06276 602 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ADH1AP07327 375 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 HTR1BP28222 390 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 TAS2R50P59544 299 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CRHR2Q13324 411 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CTSL3PQ5NE16 218 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF691Q5VV52 312 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 LIPJQ5W064 366 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 SERPINA13PQ6UXR4 307 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 Q6ZVU0 165 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 RD3Q7Z3Z2 195 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 GRPEL2Q8TAA5 225 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 KCTD7Q96MP8 289 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ASPNQ9BXN1 380 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC2A11Q9BYW1 496 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 RHBGQ9H310 441 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 TIGARQ9NQ88 270 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 TMEM30AQ9NV96 361 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 B4GALT6Q9UBX8 382 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 PSKH1P11801 424 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 MTHFD2P13995 350 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 BPIP17213 487 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 BLVRAP53004 296 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ADARB1P78563 741 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 PROX2Q3B8N5 592 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CRB2Q5IJ48 1285 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CEACAM20Q6UY09 585 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF783Q6ZMS7 281 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF367Q7RTV3 350 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 GALNT13Q8IUC8 556 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CMTM8Q8IZV2 173 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM46DQ8NEK8 389 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 MGLLQ99685 303 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 MND1Q9BWT6 205 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 OR2AG1Q9H205 316 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF385DQ9H6B1 395 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 C3orf14Q9HBI5 128 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 NEK6Q9HC98 313 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 GPR83Q9NYM4 423 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 A8MV72 311 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 PGRMC2O15173 223 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 KIAA0513O60268 411 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 JUPP14923 745 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 PREPP48147 710 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 NKX2-5P52952 324 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CREMQ03060 361 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 MTAPQ13126 283 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 KEAP1Q14145 624 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 PLEKHS1Q5SXH7 462 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 CXXC5Q7LFL8 322 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 GPR149Q86SP6 731 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 OOSP2Q86WS3 158 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 TEX26Q8N6G2 289 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM110BQ8TC76 370 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms