RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 PRDM8Q9NQV8 689 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 CLN6Q9NWW5 311 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 PRORSD1PA6NEY8 169 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 SDC3O75056 442 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 SAGP10523 405 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 CDK6Q00534 326 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 SUZ12Q15022 739 aaKnown RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 DCST1Q5T197 706 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 RNF130Q86XS8 419 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 NFKBIDQ8NI38 313 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 PMEPA1Q969W9 287 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 TEFMQ96QE5 360 aaKnown RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 VN1R3Q9BXE9 311 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 SLC6A17Q9H1V8 727 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 CABIN1Q9Y6J0 2220 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 TRIP11Q15643 1979 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 RPS17P08708 135 aaKnown RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 GNSP15586 552 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 DSTNP60981 165 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 LARS2Q15031 903 aaKnown RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 GPR68Q15743 365 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 PARM1Q6UWI2 310 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 THAP5Q7Z6K1 395 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 CLEC14AQ86T13 490 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 DPP10Q8N608 796 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 TMBIM1Q969X1 311 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 ARRDC3Q96B67 414 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 BTBD9Q96Q07 612 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 DPH2Q9BQC3 489 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 EPS8L2Q9H6S3 715 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 FANCEQ9HB96 536 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 DNAJB9Q9UBS3 223 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 DPPA5A6NC42 116 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 JUNDP17535 347 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 GSTT1P30711 240 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 GSTM5P46439 218 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 CSNK1DP48730 415 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.59□□□□□ -0.23
TCOF1-207ENST00000504761 FAM109BQ6ICB4 259 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-207ENST00000504761 CAMKVQ8NCB2 501 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 MACROD1Q9BQ69 325 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 NDEL1Q9GZM8 345 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 TOR4AQ9NXH8 423 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 SPATA7Q9P0W8 599 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 FAM47E-STBD1D6RA91 191 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 RSL1D1O76021 490 aaKnown RBP13.59□□□□□ -0.23
TCOF1-207ENST00000504761 CCT3P49368 545 aaKnown RBP13.59□□□□□ -0.23
TCOF1-207ENST00000504761 ZXDBP98169 803 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 ABHD18Q0P651 414 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 MED22Q15528 200 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 SFT2D3Q587I9 215 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 TMEM207Q6UWW9 146 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 ASRGL1Q7L266 308 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 CHMP1BQ7LBR1 199 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 CLECL1Q8IZS7 167 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 GIPC3Q8TF64 312 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 FAM120CQ9NX05 1096 aaKnown RBP13.59□□□□□ -0.23
TCOF1-207ENST00000504761 ACSL6Q9UKU0 697 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 H3BNC9 293 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 ADAMDEC1O15204 470 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 CACNG3O60359 315 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 GADD45GO95257 159 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 CD9P21926 228 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 OR4D2P58180 307 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 DEPDC4Q8N2C3 294 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.59□□□□□ -0.23
TCOF1-207ENST00000504761 OR7G3Q8NG95 312 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 TEX47Q8TBZ9 253 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 NEIL2Q969S2 332 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 HHIPQ96QV1 700 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 FAM83CQ9BQN1 747 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 IL37Q9NZH6 218 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 RAB26Q9ULW5 256 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 ARID1BQ8NFD5 2236 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-207ENST00000504761 SHROOM3Q8TF72 1996 aa13.59□□□□□ -0.23
TCOF1-207ENST00000504761 PRRT4C9JH25 899 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 ANGPTL1O95841 491 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 TIA1P31483 386 aaKnown RBP eCLIP13.58□□□□□ -0.23
TCOF1-207ENST00000504761 OR1E2P47887 323 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 ADARP55265 1226 aaKnown RBP13.58□□□□□ -0.23
TCOF1-207ENST00000504761 RPS26P62854 115 aaKnown RBP13.58□□□□□ -0.23
TCOF1-207ENST00000504761 C16orf72Q14CZ0 275 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 TCTN1Q2MV58 587 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 NXPE4Q6UWF7 544 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 USP53Q70EK8 1073 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 ASB16Q96NS5 453 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 REEP4Q9H6H4 257 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 LMAN1LQ9HAT1 526 aa13.58□□□□□ -0.23
TCOF1-207ENST00000504761 TSPAN19P0C672 248 aa13.58□□□□□ -0.24
TCOF1-207ENST00000504761 FOSL2P15408 326 aa13.58□□□□□ -0.24
TCOF1-207ENST00000504761 PTNP21246 168 aa13.58□□□□□ -0.24
TCOF1-207ENST00000504761 AOAHP28039 575 aa13.58□□□□□ -0.24
TCOF1-207ENST00000504761 GUCA1AP43080 201 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-207ENST00000504761 VSX2P58304 361 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-207ENST00000504761 GSTM4Q03013 218 aa13.58□□□□□ -0.24
TCOF1-207ENST00000504761 PAGE3Q5JUK9 113 aa13.58□□□□□ -0.24
TCOF1-207ENST00000504761 SWT1Q5T5J6 900 aaKnown RBP13.58□□□□□ -0.24
TCOF1-207ENST00000504761 FAAH2Q6GMR7 532 aa13.58□□□□□ -0.24
TCOF1-207ENST00000504761 ZNF852Q6ZMS4 543 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms