RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 GPS1Q13098 491 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 FHL1Q13642 323 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 DAG1Q14118 895 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 MYLK3Q32MK0 819 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 AMZ1Q400G9 498 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CCDC40Q4G0X9 1142 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 DCAF10Q5QP82 559 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TPRG1LQ5T0D9 272 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 C10orf25Q5T742 122 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 SYPL2Q5VXT5 272 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 AWAT2Q6E213 333 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 HMBOX1Q6NT76 420 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 FAM173BQ6P4H8 233 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TRIM65Q6PJ69 517 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 GDPD4Q6W3E5 623 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 ZNF793Q6ZN11 406 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 GBP6Q6ZN66 633 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 PIM3Q86V86 326 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TMEM200AQ86VY9 491 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 DNAAF5Q86Y56 855 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 ZNF683Q8IZ20 524 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 DEFB106AQ8N104 65 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 NDUFAF2Q8N183 169 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 NRACQ8N912 160 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 ST6GALNAC3Q8NDV1 305 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 OR4D9Q8NGE8 314 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CXorf40AQ8TE69 158 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 UBE2Q2Q8WVN8 375 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TMEM158Q8WZ71 300 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 C18orf8Q96DM3 657 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 LRRC46Q96FV0 321 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 ZDHHC12Q96GR4 267 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 SIGLEC11Q96RL6 698 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 GSDMCQ9BYG8 508 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.82□□□□□ -1.8
USP54-217ENST00000498213 NUAK2Q9H093 628 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TKTL2Q9H0I9 626 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 STN1Q9H668 368 aaKnown RBP3.82□□□□□ -1.8
USP54-217ENST00000498213 CATSPERBQ9H7T0 1116 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 RMI1Q9H9A7 625 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 UCK1Q9HA47 277 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TMEM184CQ9NVA4 438 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TMEM248Q9NWD8 314 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 OCIAD1Q9NX40 245 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CHMP5Q9NZZ3 219 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 SARDHQ9UL12 918 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 ANK2Q01484 3957 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 VPS13CQ709C8 3753 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 MGAM2Q2M2H8 2515 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 A0A1B0GVL5 298 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 RGSL1A5PLK6 1076 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 GOLGA6L3A6NEY3 463 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 OR5K4A6NMS3 321 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 KDELR3O43731 214 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 VEGFDO43915 354 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 SOCS5O75159 536 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 COQ9O75208 318 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 ZNF821O75541 412 aaPredicted RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 LETM1O95202 739 aaPredicted RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 MOCS2O96007 188 aaPredicted RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 CTSLP07711 333 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 ANKRD34CP0C6C1 535 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 TMIGD3P0DMS9 266 aaPredicted RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 ATP1A3P13637 1013 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 KRT5P13647 590 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 TSHRP16473 764 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 GALNSP34059 522 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 DLSTP36957 453 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 FASLGP48023 281 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 CPA2P48052 419 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 RGS7P49802 495 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 STK19P49842 368 aaPredicted RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 NDST2P52849 883 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 KRTAP10-7P60409 375 aaPredicted RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 SRP54P61011 504 aaKnown RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 AP1S1P61966 158 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 CSNK1G2P78368 415 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 FOXM1Q08050 763 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 ILF3Q12906 894 aaKnown RBP eCLIP3.81□□□□□ -1.89e-9■■■■■ 29.8
USP54-217ENST00000498213 RAPSNQ13702 412 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 HLTFQ14527 1009 aaKnown RBP eCLIP3.81□□□□□ -1.8
USP54-217ENST00000498213 IL11RAQ14626 422 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 SEC23BQ15437 767 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 UGP2Q16851 508 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 EXOC3L4Q17RC7 722 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 MAP9Q49MG5 647 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 DCAF12Q5T6F0 453 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 FAXCQ5TGI0 409 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 ANKRD40Q6AI12 368 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 TTI2Q6NXR4 508 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 WDR74Q6RFH5 385 aaPredicted RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 MEX3BQ6ZN04 569 aaKnown RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 KCNMB4Q86W47 210 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 APLFQ8IW19 511 aaPredicted RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 FAM71AQ8IYT1 594 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 UMODL1-AS1Q8N2C9 162 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 BBS5Q8N3I7 341 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 ESX1Q8N693 406 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 MLKLQ8NB16 471 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 OR56A4Q8NGH8 313 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms