RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 SUN1O94901 812 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 TJP3O95049 919 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 MATN4O95460 622 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 NSA2O95478 260 aaKnown RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 TPM3P06753 285 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 C8BP07358 591 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 SP1P08047 785 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 HOXD4P09016 255 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PKMP14618 531 aaKnown RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 NME2P22392 152 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 CHRNB4P30926 498 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 RPA3P35244 121 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PTGS2P35354 604 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PPARGP37231 505 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 GRIA1P42261 906 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 XCR1P46094 333 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 AVPR1BP47901 424 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 TTPAP49638 278 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 GSK3AP49840 483 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 AGTR2P50052 363 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 GDF10P55107 478 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PRAMEP78395 509 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 RHAGQ02094 409 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 OC90Q02509 493 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 RELAQ04206 551 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 FOLH1Q04609 750 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PRDX1Q06830 199 aaKnown RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 CDH17Q12864 832 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 FOXD4Q12950 439 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PTK6Q13882 451 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 GBX1Q14549 363 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 MAPKAPK3Q16644 382 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 P3H1Q32P28 736 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 FASTKD1Q53R41 847 aaKnown RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 AARS2Q5JTZ9 985 aaKnown RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 MFSD4BQ5TF39 518 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 ICE2Q659A1 982 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PTRHD1Q6GMV3 140 aaKnown RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PAPD4Q6PIY7 484 aaKnown RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 CEP128Q6ZU80 1094 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 OTOAQ7RTW8 1153 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PRSS41Q7RTY9 318 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 VN1R4Q7Z5H5 301 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 ANKRD37Q7Z713 158 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PCGF5Q86SE9 256 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 LINC00523Q86TU6 105 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 BIVMQ86UB2 503 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PLD3Q8IV08 490 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 LGI4Q8N135 537 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 RPRMLQ8N4K4 120 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 TAB3Q8N5C8 712 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 SLC5A8Q8N695 610 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 HORMAD2Q8N7B1 307 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 OR9A1PQ8NGU1 263 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 OR9A4Q8NGU2 314 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 OR6P1Q8NGX9 317 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 OR51Q1Q8NH59 317 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 FAM57AQ8TBR7 257 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 MAGEC3Q8TD91 643 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 ASB5Q8WWX0 329 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 SMPDL3AQ92484 453 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 ALG3Q92685 438 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 NINJ1Q92982 152 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 MRFAP1L1Q96HT8 127 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 SEC16BQ96JE7 1060 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 FOPNLQ96NB1 174 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PANX3Q96QZ0 392 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 UCK2Q9BZX2 261 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 P2RY12Q9H244 342 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 GSX1Q9H4S2 264 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 ZNF395Q9H8N7 513 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 TRIM45Q9H8W5 580 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 KCNJ16Q9NPI9 418 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 CATSPERZQ9NTU4 200 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 CCM2LQ9NUG4 571 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 HCN3Q9P1Z3 774 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 TAC3Q9UHF0 121 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PCYOX1Q9UHG3 505 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 TFR2Q9UP52 801 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 RNF6Q9Y252 685 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 RPH3AQ9Y2J0 694 aaPredicted RBP4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 TCAF1Q9Y4C2 921 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 PCDHA3Q9Y5H8 950 aa4.82□□□□□ -1.64
SNRNP40-204ENST00000474025 ZNF407Q9C0G0 2248 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 A0A1B0GTH9 108 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 SYCE3A1L190 88 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 SOWAHDA6NJG2 315 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 ERI2A8K979 691 aaKnown RBP4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 GOLGA6L19H0YKK7 550 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 SGK494L7N484 410 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 CDK2AP1O14519 115 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 NDC80O14777 642 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 TFECO14948 347 aaPredicted RBP4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 KPNA5O15131 536 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 CD3EAPO15446 510 aaKnown RBP4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 PSMD3O43242 534 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 HS6ST1O60243 411 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 PSIP1O75475 530 aaKnown RBP4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 ZWINTO95229 277 aa4.81□□□□□ -1.64
SNRNP40-204ENST00000474025 CCNDBP1O95273 360 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms