RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 GFAPP14136 432 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 GRK3P35626 688 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 GGT5P36269 586 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 GDF5P43026 501 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 SLC6A12P48065 614 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 HSPA7P48741 367 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 NADK2Q4G0N4 442 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 TECRLQ5HYJ1 363 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 FAM69BQ5VUD6 431 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 ZNF385CQ66K41 422 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-205ENST00000465238 FBXO42Q6P3S6 717 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 LCA5Q86VQ0 697 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 RAB43Q86YS6 212 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 KLHDC8AQ8IYD2 350 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 CYP4X1Q8N118 509 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 GALNT11Q8NCW6 608 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 CPT1CQ8TCG5 803 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 MZB1Q8WU39 189 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 SLC5A11Q8WWX8 675 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 MRPL57Q9BQC6 102 aaKnown RBP16.9■□□□□ 0.3
COL7A1-205ENST00000465238 SPRTNQ9H040 489 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-205ENST00000465238 CPSF2Q9P2I0 782 aaKnown RBP16.9■□□□□ 0.3
COL7A1-205ENST00000465238 SH2B3Q9UQQ2 575 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 CCDC151A5D8V7 595 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 MAP2K7O14733 419 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 NRP2O60462 931 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 DPM1O60762 260 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 SORBS2O94875 1100 aaKnown RBP16.89■□□□□ 0.29
COL7A1-205ENST00000465238 EZRP15311 586 aaKnown RBP16.89■□□□□ 0.29
COL7A1-205ENST00000465238 CCR8P51685 355 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 VSX2P58304 361 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-205ENST00000465238 RELAQ04206 551 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 FBXO48Q5FWF7 155 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 TCTE1Q5JU00 501 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 RHBDD2Q6NTF9 364 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 TLDC1Q6P9B6 456 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 RNF44Q7L0R7 432 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 SNX31Q8N9S9 440 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 FDCSPQ8NFU4 85 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 NEIL2Q969S2 332 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 ESAMQ96AP7 390 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 IP6K3Q96PC2 410 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 TMEM79Q9BSE2 394 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 CAPS2Q9BXY5 557 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 CD244Q9BZW8 370 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 DNAJC11Q9NVH1 559 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 DCDC2Q9UHG0 476 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 TMCO1Q9UM00 188 aa16.89■□□□□ 0.29
COL7A1-205ENST00000465238 SHANK1Q9Y566 2161 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 H3BMH7 237 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 HAT1O14929 419 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 ZSCAN9O15535 394 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-205ENST00000465238 CCNT2O60583 730 aaKnown RBP16.88■□□□□ 0.29
COL7A1-205ENST00000465238 SMIM24O75264 130 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 EIF2S1P05198 315 aaKnown RBP16.88■□□□□ 0.29
COL7A1-205ENST00000465238 GSTA1P08263 222 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 CD63P08962 238 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 MTHFD2P13995 350 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 GNAZP19086 355 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 CSNK1G2P78368 415 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 PFKFB4Q16877 469 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 WASHC2DQ5SRD0 308 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 FRMPD2BQ6IN97 320 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 TBC1D19Q8N5T2 526 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 ZNF655Q8N720 491 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-205ENST00000465238 ABHD11Q8NFV4 315 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 PROKR1Q8TCW9 393 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 RERGQ96A58 199 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-205ENST00000465238 PSMG3-AS1Q96PY0 264 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 NDC1Q9BTX1 674 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 MRPL46Q9H2W6 279 aaKnown RBP16.88■□□□□ 0.29
COL7A1-205ENST00000465238 GPR83Q9NYM4 423 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 XPR1Q9UBH6 696 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 MAP4K5Q9Y4K4 846 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 ESPL1Q14674 2120 aa16.88■□□□□ 0.29
COL7A1-205ENST00000465238 CCDC88CQ9P219 2028 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 LOC105369274A0A096LPK9 316 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 LOC102723532A0A0G2JNH3 316 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 FOXO6A8MYZ6 492 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 H0YGG7 62 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 CLGNO14967 610 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 H2AFYO75367 372 aaKnown RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 KLF7O75840 302 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 CTSBP07858 339 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 CCT5P48643 541 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 ALDH18A1P54886 795 aaKnown RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 ARF3P61204 181 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 RPS15AP62244 130 aaKnown RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 CDC16Q13042 620 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 ATP1A4Q13733 1029 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 GRM7Q14831 915 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 CATSPEREQ5SY80 951 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 JMJD6Q6NYC1 403 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 NXPE4Q6UWF7 544 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 LRRC70Q7Z2Q7 622 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 PLD3Q8IV08 490 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 OR4N4Q8N0Y3 316 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 TTC29Q8NA56 475 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 UBTD2Q8WUN7 234 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 THAP11Q96EK4 314 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms