RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 CSNK1G2P78368 415 aa21.32■■□□□ 1
USP4-208ENST00000464168 THOC5Q13769 683 aaKnown RBP21.32■■□□□ 1
USP4-208ENST00000464168 PCGF5Q86SE9 256 aa21.32■■□□□ 1
USP4-208ENST00000464168 GAS2L3Q86XJ1 694 aa21.32■■□□□ 1
USP4-208ENST00000464168 PDSS2Q86YH6 399 aa21.32■■□□□ 1
USP4-208ENST00000464168 CRLF3Q8IUI8 442 aa21.32■■□□□ 1
USP4-208ENST00000464168 KCT2Q8NC54 265 aa21.32■■□□□ 1
USP4-208ENST00000464168 M1APQ8TC57 530 aa21.32■■□□□ 1
USP4-208ENST00000464168 ZNF669Q96BR6 464 aaPredicted RBP21.32■■□□□ 1
USP4-208ENST00000464168 LURAP1Q96LR2 239 aa21.32■■□□□ 1
USP4-208ENST00000464168 CCDC138Q96M89 665 aa21.32■■□□□ 1
USP4-208ENST00000464168 TRIM8Q9BZR9 551 aa21.32■■□□□ 1
USP4-208ENST00000464168 CCDC68Q9H2F9 335 aa21.32■■□□□ 1
USP4-208ENST00000464168 CCDC177Q9NQR7 707 aaPredicted RBP21.32■■□□□ 1
USP4-208ENST00000464168 KLHL1Q9NR64 748 aa21.32■■□□□ 1
USP4-208ENST00000464168 ANKRD10Q9NXR5 420 aa21.32■■□□□ 1
USP4-208ENST00000464168 SDR42E2A6NKP2 422 aa21.31■■□□□ 1
USP4-208ENST00000464168 LCMT2O60294 686 aaKnown RBP21.31■■□□□ 1
USP4-208ENST00000464168 AGAP20933 346 aa21.31■■□□□ 1
USP4-208ENST00000464168 CDC25BP30305 580 aa21.31■■□□□ 1
USP4-208ENST00000464168 TBPL1P62380 186 aa21.31■■□□□ 1
USP4-208ENST00000464168 GPS1Q13098 491 aa21.31■■□□□ 1
USP4-208ENST00000464168 OR1C1Q15619 314 aa21.31■■□□□ 1
USP4-208ENST00000464168 EXT1Q16394 746 aa21.31■■□□□ 1
USP4-208ENST00000464168 MEP1AQ16819 746 aa21.31■■□□□ 1
USP4-208ENST00000464168 KRTCAP3Q53RY4 240 aa21.31■■□□□ 1
USP4-208ENST00000464168 SPINK14Q6IE38 97 aa21.31■■□□□ 1
USP4-208ENST00000464168 Q6ZPB1 254 aaPredicted RBP21.31■■□□□ 1
USP4-208ENST00000464168 CPNE9Q8IYJ1 553 aa21.31■■□□□ 1
USP4-208ENST00000464168 CAMKVQ8NCB2 501 aa21.31■■□□□ 1
USP4-208ENST00000464168 SCMH1Q96GD3 660 aa21.31■■□□□ 1
USP4-208ENST00000464168 GPR137Q96N19 417 aa21.31■■□□□ 1
USP4-208ENST00000464168 UTP23Q9BRU9 249 aaKnown RBP21.31■■□□□ 1
USP4-208ENST00000464168 ANKHQ9HCJ1 492 aa21.31■■□□□ 1
USP4-208ENST00000464168 MMP25Q9NPA2 562 aa21.31■■□□□ 1
USP4-208ENST00000464168 HOMER3Q9NSC5 361 aa21.31■■□□□ 1
USP4-208ENST00000464168 FEZF1A0PJY2 475 aa21.3■■□□□ 1
USP4-208ENST00000464168 ASPDHA6ND91 283 aa21.3■■□□□ 1
USP4-208ENST00000464168 FAM227AF5H4B4 570 aa21.3■■□□□ 1
USP4-208ENST00000464168 CEP104O60308 925 aa21.3■■□□□ 1
USP4-208ENST00000464168 RDH16O75452 317 aa21.3■■□□□ 1
USP4-208ENST00000464168 ESRRAP11474 423 aaPredicted RBP21.3■■□□□ 1
USP4-208ENST00000464168 MLNP12872 115 aa21.3■■□□□ 1
USP4-208ENST00000464168 COILP38432 576 aaPredicted RBP21.3■■□□□ 1
USP4-208ENST00000464168 SLC1A2P43004 574 aa21.3■■□□□ 1
USP4-208ENST00000464168 RHAGQ02094 409 aa21.3■■□□□ 1
USP4-208ENST00000464168 CDSNQ15517 529 aa21.3■■□□□ 1
USP4-208ENST00000464168 SFT2D3Q587I9 215 aa21.3■■□□□ 1
USP4-208ENST00000464168 SLC26A11Q86WA9 606 aa21.3■■□□□ 1
USP4-208ENST00000464168 SPPL2CQ8IUH8 684 aa21.3■■□□□ 1
USP4-208ENST00000464168 ZNF295-AS1Q8N0V1 137 aa21.3■■□□□ 1
USP4-208ENST00000464168 PLPP5Q8NEB5 264 aa21.3■■□□□ 1
USP4-208ENST00000464168 ZCCHC10Q8TBK6 192 aa21.3■■□□□ 1
USP4-208ENST00000464168 MAGED4Q96JG8 741 aa21.3■■□□□ 1
USP4-208ENST00000464168 PCBD2Q9H0N5 130 aa21.3■■□□□ 1
USP4-208ENST00000464168 TSPAN10Q9H1Z9 355 aaPredicted RBP21.3■■□□□ 1
USP4-208ENST00000464168 SCN3AQ9NY46 2000 aa21.29■■□□□ 1
USP4-208ENST00000464168 NCOA6Q14686 2063 aaPredicted RBP21.29■■□□□ 1
USP4-208ENST00000464168 HAUS5O94927 633 aa21.29■■□□□ 1
USP4-208ENST00000464168 EEF1DP29692 281 aaKnown RBP21.29■■□□□ 1
USP4-208ENST00000464168 SMSP52788 366 aa21.29■■□□□ 1
USP4-208ENST00000464168 ALDH6A1Q02252 535 aaKnown RBP21.29■■□□□ 1
USP4-208ENST00000464168 ABRAXAS2Q15018 415 aa21.29■■□□□ 1
USP4-208ENST00000464168 NSDHLQ15738 373 aa21.29■■□□□ 1
USP4-208ENST00000464168 PAPD4Q6PIY7 484 aaKnown RBP21.29■■□□□ 1
USP4-208ENST00000464168 LANCL2Q9NS86 450 aa21.29■■□□□ 1
USP4-208ENST00000464168 ADAMTS6Q9UKP5 1117 aa21.29■■□□□ 1
USP4-208ENST00000464168 FBXO5Q9UKT4 447 aa21.29■■□□□ 1
USP4-208ENST00000464168 PDE10AQ9Y233 779 aa21.29■■□□□ 1
USP4-208ENST00000464168 NAALAD2Q9Y3Q0 740 aa21.29■■□□□ 1
USP4-208ENST00000464168 COMMD10Q9Y6G5 202 aa21.29■■□□□ 1
USP4-208ENST00000464168 MTORP42345 2549 aa21.28■■□□□ 1
USP4-208ENST00000464168 NPIPA5E9PKD4 350 aa21.28■■□□□ 1
USP4-208ENST00000464168 C19orf84I3L1E1 186 aa21.28■■□□□ 1
USP4-208ENST00000464168 EIF3FO00303 357 aaPredicted RBP21.28■■□□□ 1
USP4-208ENST00000464168 KRT14P02533 472 aa21.28■■□□□ 1
USP4-208ENST00000464168 CD46P15529 392 aa21.28■■□□□ 1
USP4-208ENST00000464168 CXCR5P32302 372 aa21.28■■□□□ 1
USP4-208ENST00000464168 TIAL1Q01085 375 aaKnown RBP eCLIP21.28■■□□□ 1
USP4-208ENST00000464168 ACTN3Q08043 901 aaPredicted RBP21.28■■□□□ 1
USP4-208ENST00000464168 CAPN13Q6MZZ7 669 aaPredicted RBP21.28■■□□□ 1
USP4-208ENST00000464168 TTC27Q6P3X3 843 aa21.28■■□□□ 1
USP4-208ENST00000464168 MBOAT1Q6ZNC8 495 aa21.28■■□□□ 1
USP4-208ENST00000464168 ASPGQ86U10 573 aa21.28■■□□□ 1
USP4-208ENST00000464168 C17orf64Q86WR6 236 aa21.28■■□□□ 1
USP4-208ENST00000464168 SIAH3Q8IW03 269 aa21.28■■□□□ 1
USP4-208ENST00000464168 AGGF1Q8N302 714 aaeCLIP21.28■■□□□ 1
USP4-208ENST00000464168 MCUQ8NE86 351 aa21.28■■□□□ 1
USP4-208ENST00000464168 SLC13A3Q8WWT9 602 aa21.28■■□□□ 1
USP4-208ENST00000464168 FRMD6Q96NE9 622 aa21.28■■□□□ 1
USP4-208ENST00000464168 SERPINB12Q96P63 405 aa21.28■■□□□ 1
USP4-208ENST00000464168 AARSD1Q9BTE6 412 aaKnown RBP21.28■■□□□ 1
USP4-208ENST00000464168 FAM129AQ9BZQ8 928 aa21.28■■□□□ 1
USP4-208ENST00000464168 ATG10Q9H0Y0 220 aa21.28■■□□□ 1
USP4-208ENST00000464168 XAB2Q9HCS7 855 aaKnown RBP21.28■■□□□ 1
USP4-208ENST00000464168 LZTFL1Q9NQ48 299 aa21.28■■□□□ 1
USP4-208ENST00000464168 C20orf96Q9NUD7 363 aaPredicted RBP21.28■■□□□ 1
USP4-208ENST00000464168 NPIPA1Q9UND3 350 aa21.28■■□□□ 1
USP4-208ENST00000464168 MEMO1Q9Y316 297 aa21.28■■□□□ 1
USP4-208ENST00000464168 SLC22A7Q9Y694 548 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms