RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PTGFRNQ9P2B2 879 aa19.64■□□□□ 0.73
SDC1-205ENST00000447124 CORO1CQ9ULV4 474 aaPredicted RBP19.64■□□□□ 0.73
SDC1-205ENST00000447124 SVILO95425 2214 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 DNAJB6O75190 326 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 GUCA1CO95843 209 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 CCND1P24385 295 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 TSFMP43897 325 aaKnown RBP19.63■□□□□ 0.73
SDC1-205ENST00000447124 HIST2H2BCQ6DN03 193 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 SBSNQ6UWP8 590 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 ZC3HC1Q86WB0 502 aaKnown RBP19.63■□□□□ 0.73
SDC1-205ENST00000447124 OR51Q1Q8NH59 317 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 CNDP1Q96KN2 507 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 CYTH2Q99418 400 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 HAUS8Q9BT25 410 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 SARGQ9BW04 601 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 SPNS1Q9H2V7 528 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 EPS8L2Q9H6S3 715 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 SMYD2Q9NRG4 433 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 HCN3Q9P1Z3 774 aa19.63■□□□□ 0.73
SDC1-205ENST00000447124 CDC7O00311 574 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 PIAS1O75925 651 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 SAT1P21673 171 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 AP1S2P56377 157 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 TAS2R39P59534 338 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 ZNF460Q14592 562 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 ZNF169Q14929 603 aaPredicted RBP19.62■□□□□ 0.73
SDC1-205ENST00000447124 CATSPEREQ5SY80 951 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 B3GNTL1Q67FW5 361 aaPredicted RBP19.62■□□□□ 0.73
SDC1-205ENST00000447124 STRA8Q7Z7C7 330 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 SIRT6Q8N6T7 355 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 ZNF740Q8NDX6 193 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 ZCCHC10Q8TBK6 192 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 SSC4DQ8WTU2 575 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 TRIM54Q9BYV2 358 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 RNF14Q9UBS8 474 aa19.62■□□□□ 0.73
SDC1-205ENST00000447124 IGHV3-20A0A0C4DH32 117 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 CTAGE15A4D2H0 777 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 ANKUB1A6NFN9 424 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 ITGAMP11215 1152 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 CCR8P51685 355 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 TLR1Q15399 786 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 PPP1R3AQ16821 1122 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 LANCL3Q6ZV70 420 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 CTAGE6Q86UF2 777 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 AFAP1L2Q8N4X5 818 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 GRHL3Q8TE85 626 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 ANKRD49Q8WVL7 239 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 MCMBPQ9BTE3 642 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 RIC8BQ9NVN3 520 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 ZFATQ9P243 1243 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 ERRFI1Q9UJM3 462 aaPredicted RBP19.61■□□□□ 0.73
SDC1-205ENST00000447124 SLC22A7Q9Y694 548 aa19.61■□□□□ 0.73
SDC1-205ENST00000447124 FAM95CA0A1B0GW59 222 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 PCDH17O14917 1159 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 OR1F1O43749 312 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 RDH16O75452 317 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 WFS1O76024 890 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 B3GALT4O96024 378 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 ENO2P09104 434 aaPredicted RBP19.6■□□□□ 0.73
SDC1-205ENST00000447124 C8orf89P0DMQ9 161 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 ZNF37AP17032 561 aaPredicted RBP19.6■□□□□ 0.73
SDC1-205ENST00000447124 GRK3P35626 688 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 XCR1P46094 333 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 CDC16Q13042 620 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 CEP97Q8IW35 865 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 OR1N1Q8NGS0 311 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 ATL1Q8WXF7 558 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 HAS2Q92819 552 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 NEIL2Q969S2 332 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 ANKHQ9HCJ1 492 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 NAALAD2Q9Y3Q0 740 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 ZGRF1Q86YA3 2104 aa19.6■□□□□ 0.73
SDC1-205ENST00000447124 TRBC2A0A5B9 178 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 WIPF3A6NGB9 483 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 F10P00742 488 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 MINDY4Q4G0A6 757 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 RPUSD3Q6P087 351 aaKnown RBP19.59■□□□□ 0.73
SDC1-205ENST00000447124 RIPOR1Q6ZS17 1223 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 CPEB2Q7Z5Q1 589 aaKnown RBP19.59■□□□□ 0.73
SDC1-205ENST00000447124 ZBED8Q8IZ13 594 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 OR5T3Q8NGG3 340 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 SLC5A11Q8WWX8 675 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 TUBB6Q9BUF5 446 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 FAM129AQ9BZQ8 928 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 SCN2AQ99250 2005 aa19.59■□□□□ 0.73
SDC1-205ENST00000447124 NPEPPSL1A6NEC2 478 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 ZNF860A6NHJ4 632 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 CXorf49A8MYA2 514 aaPredicted RBP19.58■□□□□ 0.72
SDC1-205ENST00000447124 E2F3O00716 465 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 SEC24DO94855 1032 aaPredicted RBP19.58■□□□□ 0.72
SDC1-205ENST00000447124 SSTR1P30872 391 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 SCTRP47872 440 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 TNFSF10P50591 281 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 ARG2P78540 354 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 CSHL1Q14406 222 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 C18orf21Q32NC0 220 aaPredicted RBP19.58■□□□□ 0.72
SDC1-205ENST00000447124 CAPN12Q6ZSI9 719 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 ANKRD37Q7Z713 158 aa19.58■□□□□ 0.72
SDC1-205ENST00000447124 THOC6Q86W42 341 aaKnown RBP19.58■□□□□ 0.72
SDC1-205ENST00000447124 NKAPQ8N5F7 415 aaKnown RBP19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms