RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 CTF1Q16619 201 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 FAHD1Q6P587 224 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 GALNT18Q6P9A2 607 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 PARS2Q7L3T8 475 aaKnown RBP15.42■□□□□ 0.06
SHQ1-202ENST00000444040 VPS37AQ8NEZ2 397 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 GPR156Q8NFN8 814 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 MYOCQ99972 504 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 ASPSCR1Q9BZE9 553 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 TBC1D23Q9NUY8 699 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 THUMPD1Q9NXG2 353 aaKnown RBP15.42■□□□□ 0.06
SHQ1-202ENST00000444040 ERVK-18Q9QC07 812 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 MAPRE3Q9UPY8 281 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 CLPXO76031 633 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 C21orf59P57076 290 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 ZNF385BQ569K4 471 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 ANXA8L1Q5VT79 327 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 FBXO15Q8NCQ5 510 aaPredicted RBP15.42■□□□□ 0.06
SHQ1-202ENST00000444040 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.42■□□□□ 0.06
SHQ1-202ENST00000444040 MAL2Q969L2 176 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 PLEKHA8Q96JA3 519 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 FOPNLQ96NB1 174 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 RAD21L1Q9H4I0 556 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 PCDHGA10Q9Y5H3 936 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 GMPPBQ9Y5P6 360 aa15.42■□□□□ 0.06
SHQ1-202ENST00000444040 SOD1P00441 154 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 NR4A1P22736 598 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 PPIBP23284 216 aaKnown RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 PBLDP30039 288 aaPredicted RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 VASPP50552 380 aaPredicted RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 MVDP53602 400 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 NTHL1P78549 312 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 HTRA4P83105 476 aaPredicted RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 DUS1LQ6P1R4 473 aaKnown RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 MED27Q6P2C8 311 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 TSEN54Q7Z6J9 526 aaKnown RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 TMPRSS11BQ86T26 416 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 CCDC71Q8IV32 467 aaPredicted RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 NRSN1Q8IZ57 195 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 NAGSQ8N159 534 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 MRPL43Q8N983 215 aaKnown RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 VN1R2Q8NFZ6 395 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 MIPOL1Q8TD10 442 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 EPHX3Q9H6B9 360 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 REEP1Q9H902 201 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 GPATCH2Q9NW75 528 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 PRRC2BQ5JSZ5 2229 aaKnown RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 MGAT4DA6NG13 374 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 H3BM21 787 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 RNASET2O00584 256 aaKnown RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 SPINT1O43278 529 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 LILRB5O75023 590 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 CISD3P0C7P0 127 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 NPPBP16860 134 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 HPCAL1P37235 193 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 TBPL1P62380 186 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 NPTX1Q15818 432 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 LRRC26Q2I0M4 334 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 CATSPEREQ5SY80 951 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 PLPP4Q5VZY2 271 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 TSPYL5Q86VY4 417 aaPredicted RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 ABTB1Q969K4 478 aaPredicted RBP15.41■□□□□ 0.06
SHQ1-202ENST00000444040 OTUB2Q96DC9 234 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 TPD52L3Q96J77 140 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 KRT84Q9NSB2 600 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 FAIMQ9NVQ4 179 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 CORO2BQ9UQ03 480 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 SH2B3Q9UQQ2 575 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 TPRKBQ9Y3C4 175 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 CORINQ9Y5Q5 1042 aa15.41■□□□□ 0.06
SHQ1-202ENST00000444040 GNG14A0A1W2PPG7 69 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 PCDH7O60245 1069 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 C9P02748 559 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 TFPTP0C1Z6 253 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 ZNF8P17098 575 aaPredicted RBP15.4■□□□□ 0.06
SHQ1-202ENST00000444040 PCGF2P35227 344 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.4■□□□□ 0.06
SHQ1-202ENST00000444040 KIAA1614Q5VZ46 1190 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 ERAP2Q6P179 960 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 SLC15A4Q8N697 577 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 SMYD1Q8NB12 490 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 WDR34Q96EX3 536 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 DTD2Q96FN9 168 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 COQ10AQ96MF6 247 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 APOL4Q9BPW4 351 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 WRAP53Q9BUR4 548 aaKnown RBP15.4■□□□□ 0.06
SHQ1-202ENST00000444040 SH3BP4Q9P0V3 963 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 ATP6V1HQ9UI12 483 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 AP1M2Q9Y6Q5 423 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 PSMD11O00231 422 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 NTRK1P04629 796 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 SRPRAP08240 638 aaKnown RBP15.4■□□□□ 0.06
SHQ1-202ENST00000444040 METAP1P53582 386 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 MAD2L1BPQ15013 274 aaPredicted RBP15.4■□□□□ 0.06
SHQ1-202ENST00000444040 SMN1Q16637 294 aaKnown RBP15.4■□□□□ 0.06
SHQ1-202ENST00000444040 TBC1D25Q3MII6 688 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 PRSS36Q5K4E3 855 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 ATG16L2Q8NAA4 619 aa15.4■□□□□ 0.06
SHQ1-202ENST00000444040 GOT1L1Q8NHS2 421 aaPredicted RBP15.4■□□□□ 0.06
SHQ1-202ENST00000444040 TRUB1Q8WWH5 349 aaKnown RBP15.4■□□□□ 0.06
SHQ1-202ENST00000444040 CXorf40BQ96DE9 158 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms