RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SELENBP1Q13228 472 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 DOC2BQ14184 412 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 DSC3Q14574 896 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 PCBP1Q15365 356 aaKnown RBP eCLIP8.36□□□□□ -1.07
USP40-203ENST00000427112 EXOC3L2Q2M3D2 409 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 ARMCX4Q5H9R4 360 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 ATAD3BQ5T9A4 648 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 NCEH1Q6PIU2 408 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 DEF8Q6ZN54 512 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 DPY19L3Q6ZPD9 716 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 ANKRD13BQ86YJ7 626 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 WDR36Q8NI36 951 aaKnown RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 ABCG4Q9H172 646 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 BRD9Q9H8M2 597 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CAPN10Q9HC96 672 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 HEBP1Q9NRV9 189 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CLEC2DQ9UHP7 191 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CDH7Q9ULB5 785 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 RNF6Q9Y252 685 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 YARS2Q9Y2Z4 477 aaKnown RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 SPEF1Q9Y4P9 236 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 TDRD15B5MCY1 1934 aaKnown RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 GAPDHSO14556 408 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 AOC2O75106 756 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 ZNF623O75123 536 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 GALTP07902 379 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 LHCGRP22888 699 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 HOXA9P31269 272 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 FCGRTP55899 365 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 RPS13P62277 151 aaKnown RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 NPRL3Q12980 569 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 UGT8Q16880 541 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 SYTL3Q4VX76 610 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 RBM48Q5RL73 367 aaKnown RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 TPRG1LQ5T0D9 272 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 NXNL2Q5VZ03 156 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 CCSAPQ6IQ19 270 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 EFL1Q7Z2Z2 1120 aaKnown RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 ADCK2Q7Z695 626 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 DNAJB7Q7Z6W7 309 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 ENTHD1Q8IYW4 607 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 SLC34A3Q8N130 599 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 PPP1R2P1Q96PQ5 205 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 VPS35Q96QK1 796 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 NUAK2Q9H093 628 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 ZNF334Q9HCZ1 680 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 HCFC1R1Q9NWW0 138 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 USE1Q9NZ43 259 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 CCL26Q9Y258 94 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 WDR37Q9Y2I8 494 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 TNPO3Q9Y5L0 923 aaKnown RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 SNX11Q9Y5W9 270 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 REV3LO60673 3130 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 TYW5A2RUC4 315 aaKnown RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 CCNKO75909 580 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 CH25HO95992 272 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 F11P03951 625 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 ADRA2AP08913 450 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 PABPC1P11940 636 aaKnown RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 IFI30P13284 250 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 CR2P20023 1033 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 CD22P20273 847 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 S100A1P23297 94 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 S100A5P33763 92 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 SLC26A3P40879 764 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 B4GALNT1Q00973 533 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 MLLT1Q03111 559 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 ACVR1Q04771 509 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 FOXM1Q08050 763 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 NFE2L1Q14494 772 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 KIAA0040Q15053 153 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 SMU1Q2TAY7 513 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 CRTC1Q6UUV9 634 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 CCBE1Q6UXH8 406 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 TMIGD1Q6UXZ0 262 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 NLGN4YQ8NFZ3 816 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 PIH1D2Q8WWB5 315 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 ING5Q8WYH8 240 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 KAT2AQ92830 837 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 UCN3Q969E3 161 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 RNF31Q96EP0 1072 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 CORO1BQ9BR76 489 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 CPPED1Q9BRF8 314 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 TTTY10Q9BZA0 68 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 TP63Q9H3D4 680 aaPredicted RBP8.35□□□□□ -1.07
USP40-203ENST00000427112 CLMPQ9H6B4 373 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 RMND5AQ9H871 391 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 UCKL1Q9NWZ5 548 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 ADPRHL2Q9NX46 363 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 B4GALT6Q9UBX8 382 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 SH2B3Q9UQQ2 575 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 UGT2A1Q9Y4X1 527 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 PTPRDP23468 1912 aa8.35□□□□□ -1.07
USP40-203ENST00000427112 SMLR1H3BR10 107 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 SUV39H1O43463 412 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 FRS3O43559 492 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 KCNK2O95069 426 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 SCELO95171 688 aa8.34□□□□□ -1.07
USP40-203ENST00000427112 IL6P05231 212 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms