RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TPD52L3Q96J77 140 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 FEVQ99581 238 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 COPS8Q99627 209 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 OR51E2Q9H255 320 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 GPR83Q9NYM4 423 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 POU2F3Q9UKI9 436 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 FZD4Q9ULV1 537 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 SNX6Q9UNH7 406 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 TSC22D4Q9Y3Q8 395 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 COL4A3Q01955 1670 aa9.51□□□□□ -0.89
SS18-203ENST00000415083 KPNA4O00629 521 aaPredicted RBP9.5□□□□□ -0.89
SS18-203ENST00000415083 SCAMP2O15127 329 aaKnown RBP9.5□□□□□ -0.89
SS18-203ENST00000415083 DNTTP04053 509 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 ZNF8P17098 575 aaPredicted RBP9.5□□□□□ -0.89
SS18-203ENST00000415083 MAGP20916 626 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 RCVRNP35243 200 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 LIMS1P48059 325 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 IRF3Q14653 427 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 HKDC1Q2TB90 917 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 LYPLAL1Q5VWZ2 237 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 TMEM215Q68D42 235 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 DPY19L3Q6ZPD9 716 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 MSANTD1Q6ZTZ1 278 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 ELMOD1Q8N336 334 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 DNAJC22Q8N4W6 341 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 EPYCQ99645 322 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 CENPOQ9BU64 300 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 SPNS1Q9H2V7 528 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 RMND5AQ9H871 391 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 B4GALT6Q9UBX8 382 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.5□□□□□ -0.89
SS18-203ENST00000415083 CCL26Q9Y258 94 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 TMED5Q9Y3A6 229 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 PCDHGA3Q9Y5H0 932 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 EFCAB9A8MZ26 197 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 KDM1AO60341 852 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 DPM1O60762 260 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 TNFRSF21O75509 655 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 GSTT2P0CG29 244 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 GSTT2BP0CG30 244 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 PRPS1L1P21108 318 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 MC1RQ01726 317 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 BCL2A1Q16548 175 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 COLEC12Q5KU26 742 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 TMC8Q8IU68 726 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 SYT12Q8IV01 421 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 CMTM8Q8IZV2 173 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 WFDC6Q9BQY6 131 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 KLHL42Q9P2K6 505 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 AP3M1Q9Y2T2 418 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 TPRKBQ9Y3C4 175 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 FAM32AQ9Y421 112 aaKnown RBP9.5□□□□□ -0.89
SS18-203ENST00000415083 TESMINQ9Y4I5 508 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 C9P02748 559 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 GBAP04062 536 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 ETFAP13804 333 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 ATP1B2P14415 290 aaPredicted RBP9.5□□□□□ -0.89
SS18-203ENST00000415083 GGT2P36268 569 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 CTSCP53634 463 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 ELAVL2Q12926 359 aaKnown RBP9.5□□□□□ -0.89
SS18-203ENST00000415083 IER5LQ5T953 404 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 SLC46A3Q7Z3Q1 461 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 SETD9Q8NE22 299 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 OR9Q2Q8NGE9 314 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 CHTF18Q8WVB6 975 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 SLC38A4Q969I6 547 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 COQ8BQ96D53 544 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 ITPKCQ96DU7 683 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 KLHL25Q9H0H3 589 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 DCSTAMPQ9H295 470 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 STARD7Q9NQZ5 370 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 DNAJC11Q9NVH1 559 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 ACSL6Q9UKU0 697 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 PADI2Q9Y2J8 665 aa9.5□□□□□ -0.89
SS18-203ENST00000415083 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 FAM227AF5H4B4 570 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 M0R3G1 203 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 BNIP3LO60238 219 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 LATS1O95835 1130 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 STSP08842 583 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 COX7A2P14406 83 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 GTF2E2P29084 291 aaKnown RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 PDHA2P29803 388 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PREPP48147 710 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PPP3CCP48454 512 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 HBA1P69905 142 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 IFITM2Q01629 132 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 VEZF1Q14119 521 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 KCNJ8Q15842 424 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PRRC2BQ5JSZ5 2229 aaKnown RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 FAM180BQ6P0A1 224 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 THOC6Q86W42 341 aaKnown RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 CACTIN-AS1Q8N1I8 211 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 C1orf52Q8N6N3 182 aaKnown RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 OR52J3Q8NH60 311 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 FIBINQ8TAL6 211 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 CIDECQ96AQ7 238 aaPredicted RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 SLX1AQ9BQ83 275 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 SUV39H2Q9H5I1 410 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 BRD9Q9H8M2 597 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms