RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PLA2G15Q8NCC3 412 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 VPS37AQ8NEZ2 397 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 NDNFQ8TB73 568 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 MUC13Q9H3R2 512 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 ITM2CQ9NQX7 267 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 TAC3Q9UHF0 121 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 DYRK1BQ9Y463 629 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 DOCK9Q9BZ29 2069 aa12.9□□□□□ -0.34
VPS54-203ENST00000409558 PLXNA3P51805 1871 aa12.9□□□□□ -0.35
VPS54-203ENST00000409558 PRKRAO75569 313 aaKnown RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 OLFM2O95897 454 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 MT-ND2P03891 347 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 HTR1AP08908 422 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 PPM1AP35813 382 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 MVKQ03426 396 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 ABHD18Q0P651 414 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 CPZQ66K79 652 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 LAIR1Q6GTX8 287 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 SLC35A5Q9BS91 424 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 SNX11Q9Y5W9 270 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 DYTNA2CJ06 578 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 H7BY64 318 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 SGTAO43765 313 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 SEC13P55735 322 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 PPP2R2BQ00005 443 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 CDK5R2Q13319 367 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 SLCO6A1Q86UG4 719 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 UCN3Q969E3 161 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 ZNF689Q96CS4 500 aaPredicted RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 PRAP1Q96NZ9 151 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 GORASP2Q9H8Y8 452 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.89□□□□□ -0.35
VPS54-203ENST00000409558 SLC6A14Q9UN76 642 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 NOTCH4Q99466 2003 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 NUAK1O60285 661 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 ABCB7O75027 752 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 CREMQ03060 361 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 KRT33BQ14525 404 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 COMMD6Q7Z4G1 85 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 FAM124AQ86V42 546 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 RNF217Q8TC41 542 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 RAD21L1Q9H4I0 556 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 TBC1D23Q9NUY8 699 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 PRKAG2Q9UGJ0 569 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 ARHGEF15O94989 841 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 EMX1Q04741 257 aaPredicted RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 AQP6Q13520 282 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 CAMK2GQ13555 558 aaPredicted RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 DPY19L1Q2PZI1 675 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 ANKRD33Q7Z3H0 272 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 ADCK1Q86TW2 530 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 TAGAPQ8N103 731 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 CBARPQ8N350 705 aaPredicted RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 SMG7Q92540 1137 aaKnown RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 F2RL3Q96RI0 385 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 FEVQ99581 238 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 SLC29A3Q9BZD2 475 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 IMP3Q9NV31 184 aaKnown RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 BLOC1S6Q9UL45 172 aa12.89□□□□□ -0.35
VPS54-203ENST00000409558 SAMD4AQ9UPU9 718 aaKnown RBP12.89□□□□□ -0.35
VPS54-203ENST00000409558 APOL3O95236 402 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 NADKO95544 446 aaPredicted RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 DBTP11182 482 aaKnown RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 SOX9P48436 509 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 CLK1P49759 484 aaKnown RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 ZNF805Q5CZA5 627 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 MED27Q6P2C8 311 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 BRAT1Q6PJG6 821 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 CSGALNACT1Q8TDX6 532 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 PPCDCQ96CD2 204 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 IL4I1Q96RQ9 567 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 SMAD5Q99717 465 aaKnown RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 CCM2Q9BSQ5 444 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 RNF167Q9H6Y7 350 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 ANKRA2Q9H9E1 313 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 FZD3Q9NPG1 666 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 TMEFF2Q9UIK5 374 aaPredicted RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 SCN2AQ99250 2005 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 SPTBP11277 2137 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 SMIM30A4D0T7 59 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 NDUFS2O75306 463 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 PAK4O96013 591 aaPredicted RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 EMP3P54852 163 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 RPP38P78345 283 aaKnown RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 XAF1Q6GPH4 301 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 ARMCX6Q7L4S7 300 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 ZNF784Q8NCA9 323 aaPredicted RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 PAPD5Q8NDF8 572 aaKnown RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 ECHDC3Q96DC8 303 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 PHOX2BQ99453 314 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 KLHL25Q9H0H3 589 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 BCAS1O75363 584 aaPredicted RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 ERAL1O75616 437 aaKnown RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 NPPAP01160 153 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 IL3P08700 152 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 SLC6A12P48065 614 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 CLK3P49761 638 aaKnown RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 C11orf91Q3C1V1 193 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 LEXMQ3ZCV2 418 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms