RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 SVOPLQ8N434 492 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 SIPA1Q96FS4 1042 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 BEX1Q9HBH7 125 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 DYRK4Q9NR20 520 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 FBXL12Q9NXK8 326 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 CLEC4AQ9UMR7 237 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 VWA8A3KMH1 1905 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF236Q9UL36 1845 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 A0A1B0GVC2 190 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 A6NIN4 97 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 METTL15A6NJ78 407 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 H3BUI4 141 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 MAPK12P53778 367 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 CDH12P55289 794 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 VLDLRP98155 873 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 CAMK2GQ13555 558 aaPredicted RBP12.54□□□□□ -0.4
PTPRN-202ENST00000409251 STARD3Q14849 445 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 UGT8Q16880 541 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 OR4F3Q6IEY1 312 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 TIGD7Q6NT04 549 aaPredicted RBP12.54□□□□□ -0.4
PTPRN-202ENST00000409251 SZRD1Q7Z422 152 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 NOXA1Q86UR1 476 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 STK40Q8N2I9 435 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF557Q8N988 423 aaPredicted RBP12.54□□□□□ -0.4
PTPRN-202ENST00000409251 C11orf16Q9NQ32 467 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 CFAP97Q9P2B7 532 aa12.54□□□□□ -0.4
PTPRN-202ENST00000409251 TMEFF2Q9UIK5 374 aaPredicted RBP12.54□□□□□ -0.4
PTPRN-202ENST00000409251 THSD7BQ9C0I4 1608 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 ULK1O75385 1050 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 SOX14O95416 240 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 TP53P04637 393 aaPredicted RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 HMGA1P17096 107 aaKnown RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 EN2P19622 333 aaPredicted RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 PPP3CCP48454 512 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 STK19P49842 368 aaPredicted RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 ATP4BP51164 291 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 WDR5P61964 334 aaKnown RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 MAD2L1BPQ15013 274 aaPredicted RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 BAK1Q16611 211 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 MANEALQ5VSG8 457 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 ABI3BPQ7Z7G0 1075 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 DEDD2Q8WXF8 326 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 BADQ92934 168 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 TCEAL4Q96EI5 215 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 MTG2Q9H4K7 406 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 UBA2Q9UBT2 640 aaPredicted RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 CCL26Q9Y258 94 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 RALGAPA2Q2PPJ7 1873 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF487B1APH4 448 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 CENPBD1B2RD01 187 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 INSIG1O15503 277 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 FGF18O76093 207 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 RPS3P23396 243 aaKnown RBP eCLIP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 RRM2P31350 389 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 KRR1Q13601 381 aaKnown RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 TYW3Q6IPR3 259 aaKnown RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 PTRH1Q86Y79 214 aaKnown RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 CMTM8Q8IZV2 173 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 TAGAPQ8N103 731 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 PAPD5Q8NDF8 572 aaKnown RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 FUBP1Q96AE4 644 aaKnown RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 L3HYPDHQ96EM0 354 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 PYURFQ96I23 114 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 ATOH8Q96SQ7 321 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 POLR1EQ9GZS1 481 aaKnown RBP12.53□□□□□ -0.4
PTPRN-202ENST00000409251 C1orf109Q9NX04 203 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 SPG21Q9NZD8 308 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF222Q9UK12 451 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 PEX16Q9Y5Y5 336 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 LYVE1Q9Y5Y7 322 aa12.53□□□□□ -0.4
PTPRN-202ENST00000409251 GSAPA4D1B5 854 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 SMAD6O43541 496 aaKnown RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 TGM5O43548 720 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 LRG1P02750 347 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 SERPINF2P08697 491 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 MYL9P24844 172 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 OR3A3P47888 321 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 MNX1P50219 401 aaPredicted RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 GABARAPL2P60520 117 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 ELP6Q0PNE2 266 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 SERINC3Q13530 473 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 QPRTQ15274 297 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 FLYWCH1Q4VC44 716 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 INO80DQ53TQ3 878 aaPredicted RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 FAM180BQ6P0A1 224 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 PNCKQ6P2M8 343 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 APCDD1Q8J025 514 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 C12orf76Q8N812 135 aaPredicted RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 CNDP2Q96KP4 475 aaKnown RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF599Q96NL3 588 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 TCF25Q9BQ70 676 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 NARFLQ9H6Q4 476 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 TRIM45Q9H8W5 580 aaPredicted RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 FKBPLQ9UIM3 349 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 CIB4A0PJX0 185 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 TRIM64A6NGJ6 449 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 H3BN98 237 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 DSCR3O14972 297 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 PRAMEF12O95522 483 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms