RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ZFAND4Q86XD8 727 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 FAM20CQ8IXL6 584 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 ZNF683Q8IZ20 524 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 KRTCAP2Q8N6L1 136 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 PLA2G15Q8NCC3 412 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 FAM110BQ8TC76 370 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 NEIL2Q969S2 332 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 MMABQ96EY8 250 aaPredicted RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 VPS35Q96QK1 796 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 GRIP2Q9C0E4 1043 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 TMEM168Q9H0V1 697 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 CTPS2Q9NRF8 586 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 PNO1Q9NRX1 252 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 FAM120CQ9NX05 1096 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 SUCOQ9UBS9 1254 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 COPS7AQ9UBW8 275 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 AK5Q9Y6K8 562 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 FAM221BA6H8Z2 402 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 CDC123O75794 336 aaPredicted RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 PROS1P07225 676 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 NDUFV2P19404 249 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 HRH2P25021 359 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 TAS2R41P59536 307 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 BIKQ13323 160 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 LARS2Q15031 903 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 FAM214AQ32MH5 1076 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 TMEM164Q5U3C3 297 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 FIGLAQ6QHK4 219 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 EIF3MQ7L2H7 374 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 ADGRG6Q86SQ4 1221 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 SPNS2Q8IVW8 549 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 OR52E1Q8NGJ3 308 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 MAFAQ8NHW3 353 aaPredicted RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 DACT3Q96B18 629 aaPredicted RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 SMAD5Q99717 465 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 TIMM29Q9BSF4 260 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 PLA2G2FQ9BZM2 168 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 KCNH6Q9H252 994 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 POLR1BQ9H9Y6 1135 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 TPT1P8Q9HAU6 139 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 FARSBQ9NSD9 589 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 MRTO4Q9UKD2 239 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 FZD4Q9ULV1 537 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 KRT87PA6NCN2 255 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 FADS2P1A8MWK0 482 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 HNRNPCL2B2RXH8 293 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 C9J4A7 227 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 hCG_2039718K7EN88 272 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 GMFGO60234 142 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 C6orf47O95873 294 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 IFNW1P05000 195 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 HSD3B1P14060 373 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 HSD3B2P26439 372 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 GUCA1AP43080 201 aaPredicted RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 MNX1P50219 401 aaPredicted RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 CLCN7P51798 805 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 PDCD4Q53EL6 469 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 POMZP3Q6PJE2 187 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 PLEKHM3Q6ZWE6 761 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 CSNK1A1LQ8N752 337 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 SETD9Q8NE22 299 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 OR52J3Q8NH60 311 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 DNAJB8Q8NHS0 232 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 TADA1Q96BN2 335 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 RMND5BQ96G75 393 aaPredicted RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 BIRC8Q96P09 236 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 TRIM8Q9BZR9 551 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 MUC13Q9H3R2 512 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 MEAF6Q9HAF1 191 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 AIG1Q9NVV5 245 aa8.76□□□□□ -1.01
LIG4-202ENST00000405925 DNMT3AQ9Y6K1 912 aaPredicted RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 BRCA1P38398 1863 aaKnown RBP8.76□□□□□ -1.01
LIG4-202ENST00000405925 HMX2A2RU54 273 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 SCN2BO60939 215 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 SERPINA1P01009 418 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 OPN1SWP03999 348 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 GPIP06744 558 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 IL3P08700 152 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 IL1RNP18510 177 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 NUDT1P36639 197 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 TRPC1P48995 793 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 ACADVLP49748 655 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 GALNT1Q10472 559 aaPredicted RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 LASP1Q14847 261 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 DUOXA1Q1HG43 343 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 TMEM52BQ4KMG9 183 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CDKL4Q5MAI5 379 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 HENMT1Q5T8I9 393 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 TTC23Q5W5X9 447 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 NEK10Q6ZWH5 1172 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 RNF168Q8IYW5 571 aaPredicted RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 CYP4Z2PQ8N1L4 340 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 STX19Q8N4C7 294 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.75□□□□□ -1.01
LIG4-202ENST00000405925 IL17RCQ8NAC3 791 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 MRGPRX1Q96LB2 322 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 COL21A1Q96P44 957 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 SORT1Q99523 831 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 TSC22D3Q99576 134 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 REEP4Q9H6H4 257 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms